AT5G42200

Description : RING/U-box superfamily protein

Gene families : OG_01_0000002 (Gene family) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT5G42200
Cluster	HCCA cluster: Cluster_65

Target	Alias	Description	ECC score	Gene Family Method
AT1G49200	No alias	RING/U-box superfamily protein	0.02	Gene family
AT1G53820	No alias	RING/U-box superfamily protein	0.02	Gene family
AT2G27940	No alias	RING/U-box superfamily protein	0.03	Gene family
AT2G34990	No alias	RING/U-box superfamily protein	0.02	Gene family
AT2G37580	No alias	RING/U-box superfamily protein	0.02	Gene family
AT3G18773	No alias	RING/U-box superfamily protein	0.03	Gene family
AT4G17905	ATL4H	RING/U-box superfamily protein	0.02	Gene family
AT5G05280	No alias	RING/U-box superfamily protein	0.03	Gene family
Cpa\|evm.model.tig00020943.22	No alias	No description available	0.01	Gene family
GSVIVT01005189001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
GSVIVT01008756001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
GSVIVT01009096001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
GSVIVT01024698001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
GSVIVT01027769001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
GSVIVT01028038001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
GSVIVT01028306001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
GSVIVT01036593001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os01g20910	Os01g0311100	No description available	0.02	Gene family
LOC_Os02g35440	Os02g0561900	No description available	0.03	Gene family
LOC_Os04g49550	Os04g0585000	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os05g11860	No alias	No description available	0.02	Gene family
LOC_Os05g29676	Os05g0359833	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os06g11450	Os06g0218300	No description available	0.02	Gene family
LOC_Os06g34400	Os06g0534900,...	No description available	0.02	Gene family
LOC_Os07g42610	Os07g0618000	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os09g37050	Os09g0542600	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_10072804g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
MA_10260361g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_10436028g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_132693g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
MA_17390g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_184439g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_214717g0010	No alias	No description available	0.03	Gene family
MA_31462g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_6208058g0010	No alias	2.2.1.5 major CHO metabolism.degradation.sucrose.Susy...	0.03	Gene family
MA_6934973g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
MA_85088g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Smo39820	PACid_15420975	No description available	0.02	Gene family
Smo438800	PACid_15401761	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Solyc00g007220.3.1	Solyc00g007220.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8	0.03	Gene family
Solyc01g100095.1.1	Solyc01g100095.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Solyc03g114190.1.1	Solyc03g114190.1	No description available	0.03	Gene family
Solyc04g074820.2.1	Solyc04g074820.2	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Solyc04g082690.1.1	Solyc04g082690.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8	0.02	Gene family
Solyc08g076830.1.1	Solyc08g076830.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc10g081780.2.1	Solyc10g081780.2	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc10g081790.1.1	Solyc10g081790.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d000390	GRMZM2G312078	No description available	0.03	Gene family
Zm00001d003497	GRMZM2G171277	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d013110	GRMZM2G028188	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d016104	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d017404	GRMZM2G409372	No description available	0.02	Gene family
Zm00001d017678	GRMZM2G004480	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d029763	GRMZM2G083382	No description available	0.03	Gene family
Zm00001d029996	GRMZM2G042538	No description available	0.03	Gene family
Zm00001d030945	GRMZM2G124423	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d037019	GRMZM2G026562	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL43	0.03	Gene family
Zm00001d037300	GRMZM2G324375	No description available	0.03	Gene family
Zm00001d038766	GRMZM2G482046	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d045077	GRMZM2G151913	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d050514	GRMZM2G068239	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d051833	GRMZM5G885045	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Zm00001d052189	GRMZM2G035704	No description available	0.02	Gene family
Zm00001d052268	GRMZM2G080079	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Arabidopsis.org
MF	GO:0005488	binding	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Arabidopsis.org
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Arabidopsis.org
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	103	146

External Links

No external refs found!

AT5G42200

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation