AT5G42140

Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain

Gene families : OG_01_0000457 (Gene family) Phylogenetic Tree(s): OG0000457_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT5G42140
Cluster	HCCA cluster: Cluster_252

Target	Alias	Description	ECC score	Gene Family Method
AT1G76950	PRAF1	Regulator of chromosome condensation (RCC1) family with...	0.03	Gene family
MA_54149g0010	No alias	No description available	0.02	Gene family
Smo112120	PACid_15411059	No description available	0.02	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	ISS	Arabidopsis.org
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005543	phospholipid binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Arabidopsis.org
BP	GO:0007165	signal transduction	ISS	Arabidopsis.org
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Arabidopsis.org
MF	GO:0008289	lipid binding	None	Extended
MF	GO:0008536	Ran GTPase binding	ISS	Arabidopsis.org
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017016	Ras GTPase binding	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
MF	GO:0031267	small GTPase binding	None	Extended
MF	GO:0035091	phosphatidylinositol binding	ISS	Arabidopsis.org
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0065007	biological regulation	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000306	Znf_FYVE	617	683
IPR013591	Brevis_radix_dom	998	1053
IPR000408	Reg_chr_condens	460	507
IPR000408	Reg_chr_condens	398	446
IPR000408	Reg_chr_condens	512	561
IPR000408	Reg_chr_condens	566	613
IPR000408	Reg_chr_condens	343	394
IPR000408	Reg_chr_condens	291	339
IPR001849	PH_domain	13	118
IPR027988	BRX_N	864	899

External Links

No external refs found!