AT5G42140


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0000457 (Gene family) Phylogenetic Tree(s): OG0000457_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G42140
Cluster HCCA cluster: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
AT1G76950 PRAF1 Regulator of chromosome condensation (RCC1) family with... 0.03 Gene family
MA_54149g0010 No alias No description available 0.02 Gene family
Smo112120 PACid_15411059 No description available 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding ISS Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0007165 signal transduction ISS Arabidopsis.org
MF GO:0008270 zinc ion binding ISS Arabidopsis.org
MF GO:0008536 Ran GTPase binding ISS Arabidopsis.org
MF GO:0035091 phosphatidylinositol binding ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000306 Znf_FYVE 617 683
IPR013591 Brevis_radix_dom 998 1053
IPR000408 Reg_chr_condens 460 507
IPR000408 Reg_chr_condens 398 446
IPR000408 Reg_chr_condens 512 561
IPR000408 Reg_chr_condens 566 613
IPR000408 Reg_chr_condens 343 394
IPR000408 Reg_chr_condens 291 339
IPR001849 PH_domain 13 118
IPR027988 BRX_N 864 899
No external refs found!