AMTR_s00007p00267580 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00007.382

Description : RNA biosynthesis.transcriptional activation.B3 superfamily.ARF transcription factor


Gene families : OG_01_0000080 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000080_tree ,
OG_02_0000516 (LandPlants) Phylogenetic Tree(s): OG_02_0000516_tree ,
OG_03_0002193 (SeedPlants) Phylogenetic Tree(s): OG_03_0002193_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00007p00267580
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AT2G33860 ARF3, ETT Transcriptional factor B3 family protein /... 0.02 Archaeplastida
GSVIVT01025691001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01032251001 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 Archaeplastida
LOC_Os05g48870.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Pp3c4_12970V3.1 No alias auxin response factor 16 0.03 Archaeplastida
Smo117217 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
Solyc01g096070.3.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Solyc11g069500.2.1 No alias transcription factor (ARF) 0.03 Archaeplastida
Zm00001e015164_P002 No alias transcription factor (ARF) 0.03 Archaeplastida
AT5G37020 ARF8, ATARF8 auxin response factor 8 0.02 LandPlants
Smo117217 No alias RNA biosynthesis.transcriptional activation.B3... 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 107 208
IPR003311 AUX_IAA 842 910
IPR010525 Auxin_resp 233 316
No external refs found!