AT5G35530

Description : Ribosomal protein S3 family protein

Gene families : OG_01_0001443 (Gene family) Phylogenetic Tree(s): OG0001443_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT5G35530
Cluster	HCCA cluster: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021462.41	No alias	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.3	Gene family
Cre02.g102250	No alias	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.43	Gene family
GSVIVT01015110001	No alias	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.22	Gene family
GSVIVT01016775001	No alias	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.32	Gene family
GSVIVT01035451001	No alias	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.2	Gene family
LOC_Os03g38000	Os03g0577000	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.36	Gene family
MA_10436283g0010	No alias	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.07	Gene family
MA_120861g0010	No alias	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.07	Gene family
Smo270414	PACid_15420223	No description available	0.13	Gene family
Smo270666	PACid_15421786	No description available	0.13	Gene family
Smo438700	PACid_15423262	No description available	0.11	Gene family
Solyc07g041310.3.1	Solyc07g041310.3	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.25	Gene family
Solyc08g061850.3.1	Solyc08g061850.3	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.08	Gene family
Solyc08g061960.3.1	Solyc08g061960.3	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.36	Gene family
Zm00001d024511	GRMZM2G099352	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.34	Gene family
Zm00001d049500	GRMZM2G074300	29.2.1.2.1.3 protein.synthesis.ribosomal...	0.35	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	RCA	Arabidopsis.org
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Arabidopsis.org
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	IDA	Arabidopsis.org
CC	GO:0005737	cytoplasm	ISM	Arabidopsis.org
CC	GO:0005829	cytosol	IDA	Arabidopsis.org
CC	GO:0005840	ribosome	None	Extended
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006412	translation	ISS	Arabidopsis.org
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006970	response to osmotic stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
CC	GO:0009506	plasmodesma	IDA	Arabidopsis.org
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009651	response to salt stress	IEP	Arabidopsis.org
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Arabidopsis.org
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Arabidopsis.org
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Arabidopsis.org
CC	GO:0022627	cytosolic small ribosomal subunit	ISS	Arabidopsis.org
CC	GO:0030054	cell junction	None	Extended
BP	GO:0032259	methylation	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044428	nuclear part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044445	cytosolic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	20	93
IPR001351	Ribosomal_S3_C	106	188

External Links

No external refs found!

AT5G35530

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation