AT5G35210


Description : metalloendopeptidases;zinc ion binding;DNA binding


Gene families : OG_01_0003405 (Gene family) Phylogenetic Tree(s): OG0003405_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G35210
Cluster HCCA cluster: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031411001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.03 Gene family
GSVIVT01037231001 No alias 27.3.63 RNA.regulation of transcription.PHD finger... 0.05 Gene family
LOC_Os07g46690 Os07g0661500,... 27.3.63 RNA.regulation of transcription.PHD finger... 0.08 Gene family
LOC_Os11g05130 Os11g0148700 27.3.67 RNA.regulation of transcription.putative... 0.13 Gene family
MA_10689g0010 No alias 29.5 protein.degradation metalloendopeptidaseszinc ion... 0.04 Gene family
Smo441144 PACid_15405523 No description available 0.03 Gene family
Solyc11g065160.2.1 Solyc11g065160.2 27.3.63 RNA.regulation of transcription.PHD finger... 0.04 Gene family
Zm00001d004925 GRMZM2G403562 29.5 protein.degradation metalloendopeptidaseszinc ion... 0.08 Gene family
Zm00001d023391 GRMZM2G314661 29.5 protein.degradation metalloendopeptidaseszinc ion... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding IDA Arabidopsis.org
MF GO:0003677 DNA binding ISS Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
CC GO:0009707 chloroplast outer membrane IDA Arabidopsis.org
CC GO:0009941 chloroplast envelope IDA Arabidopsis.org
BP GO:0010019 chloroplast-nucleus signaling pathway IDA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR028942 WHIM1_dom 307 339
IPR018501 DDT_dom 193 246
IPR019787 Znf_PHD-finger 414 456
No external refs found!