AT5G27700


Description : Ribosomal protein S21e


Gene families : OG_01_0001874 (Gene family) Phylogenetic Tree(s): OG0001874_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G27700
Cluster HCCA cluster: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
AT3G53890 No alias Ribosomal protein S21e 0.03 Gene family
Cpa|evm.model.tig00020780.14 No alias 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.06 Gene family
Cre03.g203450 No alias 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.29 Gene family
GSVIVT01017756001 No alias 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.17 Gene family
GSVIVT01031151001 No alias 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.17 Gene family
LOC_Os03g46490 Os03g0667800 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.04 Gene family
MA_21647g0010 No alias 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.13 Gene family
MA_73657g0010 No alias 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.06 Gene family
Smo271040 PACid_15420160 No description available 0.09 Gene family
Solyc01g066840.3.1 Solyc01g066840.3 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.28 Gene family
Solyc04g074910.3.1 Solyc04g074910.3 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.22 Gene family
Zm00001d012886 GRMZM2G125300 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.02 Gene family
Zm00001d029124 GRMZM2G134109 29.2.1.2.1.21 protein.synthesis.ribosomal... 0.26 Gene family

Type GO Term Name Evidence Source
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Arabidopsis.org
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
MF GO:0003735 structural constituent of ribosome IBA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005840 ribosome ISS Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0006414 translational elongation IBA Arabidopsis.org
BP GO:0009664 plant-type cell wall organization RCA Arabidopsis.org
BP GO:0016925 protein sumoylation RCA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
BP GO:0042254 ribosome biogenesis ISS Arabidopsis.org
BP GO:0042274 ribosomal small subunit biogenesis IBA Arabidopsis.org
BP GO:0042545 cell wall modification RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001931 Ribosomal_S21e 1 77
No external refs found!