AT5G25390 (SHN2)

Aliases : SHN2

Description : Integrase-type DNA-binding superfamily protein

Gene families : OG_01_0000000 (Gene family) Phylogenetic Tree(s): OG0000000_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT5G25390
Cluster	HCCA cluster: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AT1G12890	No alias	Integrase-type DNA-binding superfamily protein	0.05	Gene family
AT1G12980	ESR1, DRN	Integrase-type DNA-binding superfamily protein	0.04	Gene family
AT1G77200	No alias	Integrase-type DNA-binding superfamily protein	0.03	Gene family
AT2G22200	No alias	Integrase-type DNA-binding superfamily protein	0.03	Gene family
AT2G40220	ABI4, SAN5,...	Integrase-type DNA-binding superfamily protein	0.04	Gene family
AT2G44840	ATERF13, ERF13, EREBP	ethylene-responsive element binding factor 13	0.04	Gene family
AT3G14230	RAP2.2	related to AP2 2	0.03	Gene family
AT3G23240	ERF1, ATERF1	ethylene response factor 1	0.03	Gene family
AT4G13620	No alias	Integrase-type DNA-binding superfamily protein	0.03	Gene family
AT4G17500	ERF-1, ATERF-1	ethylene responsive element binding factor 1	0.03	Gene family
AT5G50080	ERF110	ethylene response factor 110	0.03	Gene family
GSVIVT01005747001	No alias	No description available	0.03	Gene family
GSVIVT01017542001	No alias	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
GSVIVT01018272001	No alias	17.5.2 hormone metabolism.ethylene.signal transduction...	0.04	Gene family
GSVIVT01027770001	No alias	No description available	0.02	Gene family
GSVIVT01032785001	No alias	No description available	0.04	Gene family
GSVIVT01036201001	No alias	No description available	0.02	Gene family
GSVIVT01036388001	No alias	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
LOC_Os01g07120	Os01g0165000	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
LOC_Os01g10370	Os01g0200600	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.03	Gene family
LOC_Os01g58420	Os01g0797600	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
LOC_Os02g10760	Os02g0202000	17.5.2 hormone metabolism.ethylene.signal transduction...	0.04	Gene family
LOC_Os03g08460	Os03g0182800	No description available	0.02	Gene family
LOC_Os03g60120	Os03g0815800	No description available	0.03	Gene family
LOC_Os04g34970	Os04g0429050	No description available	0.02	Gene family
LOC_Os04g46240	Os04g0547500	No description available	0.02	Gene family
LOC_Os05g28350	Os05g0351200	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.01	Gene family
LOC_Os06g08340	Os06g0181700	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
LOC_Os06g40150	Os06g0604000	17.5.2 hormone metabolism.ethylene.signal transduction...	0.04	Gene family
LOC_Os06g47590	Os06g0691100	No description available	0.02	Gene family
LOC_Os07g22770	Os07g0410700	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
LOC_Os07g47330	Os07g0669500	No description available	0.02	Gene family
LOC_Os08g07700	Os08g0173700	17.5.2 hormone metabolism.ethylene.signal transduction...	0.03	Gene family
LOC_Os11g13840	Os11g0242300	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.03	Gene family
LOC_Os12g39330	Os12g0582900	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
MA_10430231g0010	No alias	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
MA_179692g0020	No alias	No description available	0.02	Gene family
MA_180106g0010	No alias	No description available	0.02	Gene family
MA_2040g0010	No alias	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
MA_24801g0010	No alias	No description available	0.02	Gene family
MA_27309g0010	No alias	No description available	0.02	Gene family
MA_3073g0010	No alias	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
MA_42369g0010	No alias	No description available	0.02	Gene family
MA_426919g0010	No alias	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
MA_54341g0010	No alias	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
MA_6447416g0010	No alias	No description available	0.02	Gene family
MA_66969g0010	No alias	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
MA_9321671g0010	No alias	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.01	Gene family
Solyc01g065980.3.1	Solyc01g065980.3	No description available	0.03	Gene family
Solyc01g067540.1.1	Solyc01g067540.1	No description available	0.04	Gene family
Solyc03g093540.1.1	Solyc03g093540.1	No description available	0.03	Gene family
Solyc04g050750.1.1	Solyc04g050750.1	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
Solyc04g072300.1.1	Solyc04g072300.1	No description available	0.04	Gene family
Solyc04g080910.1.1	Solyc04g080910.1	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
Solyc05g050790.2.1	Solyc05g050790.2	No description available	0.03	Gene family
Solyc06g050520.2.1	Solyc06g050520.2	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.04	Gene family
Solyc06g063070.3.1	Solyc06g063070.3	No description available	0.02	Gene family
Solyc06g066540.1.1	Solyc06g066540.1	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.03	Gene family
Solyc06g068360.3.1	Solyc06g068360.3	No description available	0.05	Gene family
Solyc08g007230.2.1	Solyc08g007230.2	No description available	0.04	Gene family
Solyc09g075420.3.1	Solyc09g075420.3	No description available	0.03	Gene family
Solyc11g045680.2.1	Solyc11g045680.2	No description available	0.02	Gene family
Solyc12g013660.2.1	Solyc12g013660.2	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
Zm00001d009622	GRMZM2G100982	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.04	Gene family
Zm00001d012585	GRMZM2G132185	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
Zm00001d017480	GRMZM5G816314	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
Zm00001d022488	GRMZM2G307119	No description available	0.04	Gene family
Zm00001d023535	GRMZM2G544539	No description available	0.02	Gene family
Zm00001d024324	GRMZM2G020054	No description available	0.03	Gene family
Zm00001d026182	No alias	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.03	Gene family
Zm00001d027686	No alias	17.5.2 hormone metabolism.ethylene.signal transduction...	0.03	Gene family
Zm00001d029679	GRMZM2G477287	No description available	0.04	Gene family
Zm00001d030862	GRMZM2G039112	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.04	Gene family
Zm00001d038001	GRMZM2G093595	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.04	Gene family
Zm00001d039077	GRMZM5G846057	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.02	Gene family
Zm00001d043205	GRMZM2G310368	17.5.2 hormone metabolism.ethylene.signal transduction...	0.03	Gene family
Zm00001d046501	No alias	17.5.2 hormone metabolism.ethylene.signal transduction...	0.07	Gene family
Zm00001d047860	GRMZM2G007406	27.3.3 RNA.regulation of transcription.AP2/EREBP,...	0.04	Gene family
Zm00001d049364	GRMZM2G089995	17.5.2 hormone metabolism.ethylene.signal transduction...	0.03	Gene family
Zm00001d052026	GRMZM2G111415	17.5.2 hormone metabolism.ethylene.signal transduction...	0.02	Gene family
Zm00001d052365	GRMZM2G060465	No description available	0.03	Gene family

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Arabidopsis.org
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Arabidopsis.org
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Arabidopsis.org
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Arabidopsis.org
CC	GO:0005634	nucleus	ISM	Arabidopsis.org
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Arabidopsis.org
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	6	48

External Links

No external refs found!

AT5G25390 (SHN2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation