AT5G25060


Description : RNA recognition motif (RRM)-containing protein


Gene families : OG_01_0003084 (Gene family) Phylogenetic Tree(s): OG0003084_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G25060
Cluster HCCA cluster: Cluster_197

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g08360 Os02g0179900 27.4 RNA.RNA binding RNA recognition motif... 0.03 Gene family
Zm00001d015499 GRMZM2G133308,... 27.4 RNA.RNA binding RNA recognition motif... 0.04 Gene family

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Arabidopsis.org
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation RCA Arabidopsis.org
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Arabidopsis.org
MF GO:0003723 RNA binding ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006366 transcription by RNA polymerase II RCA Arabidopsis.org
BP GO:0006396 RNA processing RCA Arabidopsis.org
BP GO:0007346 regulation of mitotic cell cycle RCA Arabidopsis.org
BP GO:0009887 animal organ morphogenesis RCA Arabidopsis.org
BP GO:0009888 tissue development RCA Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Arabidopsis.org
BP GO:0010413 glucuronoxylan metabolic process RCA Arabidopsis.org
BP GO:0010638 positive regulation of organelle organization RCA Arabidopsis.org
BP GO:0016926 protein desumoylation RCA Arabidopsis.org
BP GO:0033044 regulation of chromosome organization RCA Arabidopsis.org
BP GO:0045492 xylan biosynthetic process RCA Arabidopsis.org
BP GO:0050665 hydrogen peroxide biosynthetic process RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 181 253
IPR013170 mRNA_splic_Cwf21_dom 797 836
IPR000061 Surp 327 379
No external refs found!