AT5G24930 (ATCOL4, COL4)


Aliases : ATCOL4, COL4

Description : CONSTANS-like 4


Gene families : OG_01_0000267 (Gene family) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G24930
Cluster HCCA cluster: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
LOC_Os02g08150 Os02g0178100 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.02 Gene family
LOC_Os04g42020 Os04g0497700 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.05 Gene family
LOC_Os10g41100 Os10g0560400 No description available 0.03 Gene family
MA_7292g0010 No alias 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.05 Gene family
Solyc07g006630.3.1 Solyc07g006630.3 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.03 Gene family
Zm00001d003162 GRMZM2G095598 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.04 Gene family
Zm00001d015468 GRMZM2G148772 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.03 Gene family
Zm00001d025770 No alias 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.04 Gene family
Zm00001d046925 GRMZM2G038783 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.06 Gene family

Type GO Term Name Evidence Source
BP GO:0000165 MAPK cascade RCA Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated TAS Arabidopsis.org
BP GO:0006612 protein targeting to membrane RCA Arabidopsis.org
MF GO:0008270 zinc ion binding ISS Arabidopsis.org
BP GO:0009617 response to bacterium RCA Arabidopsis.org
BP GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway RCA Arabidopsis.org
BP GO:0009867 jasmonic acid mediated signaling pathway RCA Arabidopsis.org
BP GO:0009965 leaf morphogenesis RCA Arabidopsis.org
BP GO:0010310 regulation of hydrogen peroxide metabolic process RCA Arabidopsis.org
BP GO:0010363 regulation of plant-type hypersensitive response RCA Arabidopsis.org
BP GO:0030003 cellular cation homeostasis RCA Arabidopsis.org
BP GO:0030154 cell differentiation RCA Arabidopsis.org
BP GO:0031348 negative regulation of defense response RCA Arabidopsis.org
BP GO:0035304 regulation of protein dephosphorylation RCA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0070838 divalent metal ion transport RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010402 CCT_domain 339 381
IPR000315 Znf_B-box 48 87
IPR000315 Znf_B-box 90 135
No external refs found!