AT5G23120 (HCF136)


Aliases : HCF136

Description : photosystem II stability/assembly factor, chloroplast (HCF136)


Gene families : OG_01_0008663 (Gene family) Phylogenetic Tree(s): OG0008663_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G23120
Cluster HCCA cluster: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cre06.g273700 No alias 29.8 protein.assembly and cofactor ligation encodes a... 0.03 Gene family
GSVIVT01012045001 No alias 1.1.1.3 PS.lightreaction.photosystem II.biogenesis... 0.19 Gene family
MA_10433328g0010 No alias 29.8 protein.assembly and cofactor ligation encodes a... 0.02 Gene family
Smo227615 PACid_15406207 29.8 protein.assembly and cofactor ligation encodes a... 0.04 Gene family
Solyc02g014150.3.1 Solyc02g014150.3 1.1.1.3 PS.lightreaction.photosystem II.biogenesis... 0.17 Gene family
Zm00001d036340 GRMZM2G102838 29.8 protein.assembly and cofactor ligation encodes a... 0.1 Gene family

Type GO Term Name Evidence Source
BP GO:0006098 pentose-phosphate shunt RCA Arabidopsis.org
BP GO:0006364 rRNA processing RCA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
CC GO:0009533 chloroplast stromal thylakoid IDA Arabidopsis.org
CC GO:0009534 chloroplast thylakoid IDA Arabidopsis.org
CC GO:0009535 chloroplast thylakoid membrane IDA Arabidopsis.org
CC GO:0009543 chloroplast thylakoid lumen IDA Arabidopsis.org
CC GO:0009543 chloroplast thylakoid lumen ISS Arabidopsis.org
CC GO:0009570 chloroplast stroma IDA Arabidopsis.org
CC GO:0009579 thylakoid IDA Arabidopsis.org
BP GO:0009637 response to blue light RCA Arabidopsis.org
BP GO:0009657 plastid organization IMP Arabidopsis.org
BP GO:0009657 plastid organization RCA Arabidopsis.org
BP GO:0009735 response to cytokinin IDA Arabidopsis.org
BP GO:0009902 chloroplast relocation RCA Arabidopsis.org
CC GO:0009941 chloroplast envelope IDA Arabidopsis.org
BP GO:0010027 thylakoid membrane organization RCA Arabidopsis.org
BP GO:0010114 response to red light RCA Arabidopsis.org
BP GO:0010207 photosystem II assembly RCA Arabidopsis.org
BP GO:0010218 response to far red light RCA Arabidopsis.org
BP GO:0010304 PSII associated light-harvesting complex II catabolic process RCA Arabidopsis.org
BP GO:0015995 chlorophyll biosynthetic process RCA Arabidopsis.org
BP GO:0016117 carotenoid biosynthetic process RCA Arabidopsis.org
CC GO:0030095 chloroplast photosystem II ISS Arabidopsis.org
CC GO:0031977 thylakoid lumen IDA Arabidopsis.org
BP GO:0034660 ncRNA metabolic process RCA Arabidopsis.org
BP GO:0035304 regulation of protein dephosphorylation RCA Arabidopsis.org
BP GO:0042744 hydrogen peroxide catabolic process RCA Arabidopsis.org
BP GO:0042793 plastid transcription RCA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0046686 response to cadmium ion IEP Arabidopsis.org
BP GO:0046686 response to cadmium ion RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR028203 PSII_CF48-like_dom 81 402
No external refs found!