AT5G20730 (TIR5, MSG1, NPH4,...)


Aliases : TIR5, MSG1, NPH4, IAA23, IAA25, IAA21, BIP, ARF7

Description : Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related


Gene families : OG_01_0000037 (Gene family) Phylogenetic Tree(s): OG0000037_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G20730

Target Alias Description ECC score Gene Family Method Actions
AT1G19220 ARF19, IAA22, ARF11 auxin response factor 19 0.05 Gene family
Cpa|evm.model.tig00020904.93 No alias No description available 0.01 Gene family
GSVIVT01004942001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.02 Gene family
GSVIVT01032251001 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
LOC_Os02g06910 Os02g0164900 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family
LOC_Os04g57610 Os04g0671900 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
MA_10199543g0020 No alias 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Solyc12g042077.1.1 Solyc12g042077.1 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.03 Gene family
Zm00001d042267 GRMZM2G338259 27.3.4 RNA.regulation of transcription.ARF, Auxin... 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IDA Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated TAS Arabidopsis.org
BP GO:0009630 gravitropism RCA Arabidopsis.org
BP GO:0009630 gravitropism TAS Arabidopsis.org
BP GO:0009638 phototropism IMP Arabidopsis.org
BP GO:0009723 response to ethylene IGI Arabidopsis.org
BP GO:0009733 response to auxin IMP Arabidopsis.org
BP GO:0009733 response to auxin RCA Arabidopsis.org
BP GO:0009741 response to brassinosteroid RCA Arabidopsis.org
BP GO:0009785 blue light signaling pathway IMP Arabidopsis.org
BP GO:0010311 lateral root formation IGI Arabidopsis.org
BP GO:0040008 regulation of growth TAS Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated IMP Arabidopsis.org
BP GO:0048366 leaf development IGI Arabidopsis.org
BP GO:0048527 lateral root development IGI Arabidopsis.org
BP GO:0048527 lateral root development RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010525 Auxin_resp 253 336
IPR003340 B3_DNA-bd 127 228
IPR033389 AUX/IAA_dom 1036 1124
No external refs found!