AT5G20320 (DCL4, ATDCL4)


Aliases : DCL4, ATDCL4

Description : dicer-like 4


Gene families : OG_01_0000130 (Gene family) Phylogenetic Tree(s): OG0000130_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G20320
Cluster HCCA cluster: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000741.30 No alias No description available 0.03 Gene family
Cpa|evm.model.tig00000741.31 No alias No description available 0.01 Gene family
Cre07.g345900 No alias No description available 0.05 Gene family
GSVIVT01001045001 No alias 27.1.20 RNA.processing.degradation dicer Encodes an... 0.08 Gene family
GSVIVT01035494001 No alias No description available 0.02 Gene family
LOC_Os01g68120 Os01g0909200 No description available 0.02 Gene family
LOC_Os10g34430 Os10g0485600 27.1.20 RNA.processing.degradation dicer Encodes a... 0.04 Gene family
MA_10437243g0010 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.05 Gene family
MA_10437243g0020 No alias 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.03 Gene family
Smo444049 PACid_15413649 27.1.20 RNA.processing.degradation dicer Encodes an... 0.03 Gene family
Smo86110 PACid_15420555 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.03 Gene family
Solyc07g005030.3.1 Solyc07g005030.3 27.1.20 RNA.processing.degradation dicer Encodes an... 0.08 Gene family
Solyc08g067210.3.1 Solyc08g067210.3 No description available 0.04 Gene family
Solyc10g005130.3.1 Solyc10g005130.3 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.02 Gene family
Solyc10g006210.2.1 Solyc10g006210.2 No description available 0.02 Gene family
Zm00001d013796 GRMZM2G301405 27.1.20 RNA.processing.degradation dicer Encodes a... 0.03 Gene family
Zm00001d025830 GRMZM2G024466,... 27.1.20 RNA.processing.degradation dicer Encodes an... 0.04 Gene family
Zm00001d027412 GRMZM2G040762 27.1.20 RNA.processing.degradation dicer Encodes a Dicer... 0.04 Gene family
Zm00001d042432 GRMZM5G814985 No description available 0.06 Gene family

Type GO Term Name Evidence Source
BP GO:0000278 mitotic cell cycle RCA Arabidopsis.org
BP GO:0000398 mRNA splicing, via spliceosome RCA Arabidopsis.org
MF GO:0003723 RNA binding ISS Arabidopsis.org
MF GO:0004525 ribonuclease III activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0006342 chromatin silencing RCA Arabidopsis.org
BP GO:0006353 DNA-templated transcription, termination IMP Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0006396 RNA processing ISS Arabidopsis.org
BP GO:0006396 RNA processing RCA Arabidopsis.org
BP GO:0007267 cell-cell signaling RCA Arabidopsis.org
BP GO:0009616 virus induced gene silencing IGI Arabidopsis.org
BP GO:0009616 virus induced gene silencing RCA Arabidopsis.org
BP GO:0009640 photomorphogenesis RCA Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy RCA Arabidopsis.org
BP GO:0009845 seed germination RCA Arabidopsis.org
BP GO:0009909 regulation of flower development RCA Arabidopsis.org
BP GO:0009933 meristem structural organization RCA Arabidopsis.org
BP GO:0010050 vegetative phase change IMP Arabidopsis.org
BP GO:0010050 vegetative phase change RCA Arabidopsis.org
BP GO:0010162 seed dormancy process RCA Arabidopsis.org
BP GO:0010182 sugar mediated signaling pathway RCA Arabidopsis.org
BP GO:0010216 maintenance of DNA methylation IMP Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference IMP Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Arabidopsis.org
BP GO:0010599 production of lsiRNA involved in RNA interference IMP Arabidopsis.org
BP GO:0016567 protein ubiquitination RCA Arabidopsis.org
BP GO:0016569 covalent chromatin modification RCA Arabidopsis.org
BP GO:0019915 lipid storage RCA Arabidopsis.org
BP GO:0030422 production of siRNA involved in RNA interference IMP Arabidopsis.org
BP GO:0030422 production of siRNA involved in RNA interference RCA Arabidopsis.org
BP GO:0031047 gene silencing by RNA RCA Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Arabidopsis.org
BP GO:0043687 post-translational protein modification RCA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Arabidopsis.org
BP GO:0050826 response to freezing RCA Arabidopsis.org
BP GO:0051607 defense response to virus IMP Arabidopsis.org
BP GO:0051607 defense response to virus RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003100 PAZ_dom 954 1076
IPR001650 Helicase_C 476 590
IPR011545 DEAD/DEAH_box_helicase_dom 127 287
IPR005034 Dicer_dimerisation_dom 656 744
IPR000999 RNase_III_dom 1327 1436
IPR000999 RNase_III_dom 1119 1251
No external refs found!