AT5G20290


Description : Ribosomal protein S8e family protein


Gene families : OG_01_0000632 (Gene family) Phylogenetic Tree(s): OG0000632_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G20290
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.79 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.24 Gene family
Cre06.g272800 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.25 Gene family
GSVIVT01006249001 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.08 Gene family
GSVIVT01031566001 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.23 Gene family
GSVIVT01037763001 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.25 Gene family
LOC_Os02g28810 Os02g0489400 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.28 Gene family
LOC_Os04g28180 Os04g0349500 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.09 Gene family
MA_10436736g0010 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.07 Gene family
MA_14571g0010 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.15 Gene family
MA_9738483g0010 No alias 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.03 Gene family
Solyc06g007570.3.1 Solyc06g007570.3 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.21 Gene family
Solyc06g083180.3.1 Solyc06g083180.3 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.21 Gene family
Solyc07g065170.3.1 Solyc07g065170.3 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.2 Gene family
Solyc09g057650.3.1 Solyc09g057650.3 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.06 Gene family
Solyc10g006070.3.1 Solyc10g006070.3 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.22 Gene family
Zm00001d053630 GRMZM2G336875 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.02 Gene family
Zm00001d053632 GRMZM2G063700 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.03 Gene family
Zm00001d053635 GRMZM2G360677 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.07 Gene family
Zm00001d053636 GRMZM2G051848 29.2.1.2.1.8 protein.synthesis.ribosomal... 0.13 Gene family

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA Arabidopsis.org
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
MF GO:0003735 structural constituent of ribosome IBA Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005840 ribosome ISS Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0006414 translational elongation IBA Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
BP GO:0042254 ribosome biogenesis ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 1 201
No external refs found!