AT5G20160


Description : Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein


Gene families : OG_01_0003049 (Gene family) Phylogenetic Tree(s): OG0003049_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G20160
Cluster HCCA cluster: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000600.11 No alias 29.2.1.2.2.57 protein.synthesis.ribosomal... 0.03 Gene family
Cre06.g249250 No alias 29.2.1.2.2.1730 protein.synthesis.ribosomal... 0.35 Gene family
GSVIVT01015520001 No alias 29.2.1.2.2.1730 protein.synthesis.ribosomal... 0.08 Gene family
LOC_Os03g13800 Os03g0241200 29.2.1.2.2.57 protein.synthesis.ribosomal... 0.13 Gene family
MA_10201g0010 No alias 29.2.2.3.1 protein.synthesis.ribosome... 0.02 Gene family
MA_433779g0010 No alias 29.2.2.3.1 protein.synthesis.ribosome... 0.02 Gene family
Smo159569 PACid_15418776 29.2.1.2.2.57 protein.synthesis.ribosomal... 0.02 Gene family
Solyc09g011420.3.1 Solyc09g011420.3 29.2.2.3.1 protein.synthesis.ribosome... 0.05 Gene family
Solyc09g092080.3.1 Solyc09g092080.3 29.2.2.3.1 protein.synthesis.ribosome... 0.28 Gene family
Zm00001d047958 GRMZM2G140799 29.2.1.2.2.57 protein.synthesis.ribosomal... 0.12 Gene family

Type GO Term Name Evidence Source
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing RCA Arabidopsis.org
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003723 RNA binding ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 23 111
No external refs found!