AT5G19020 (MEF18)


Aliases : MEF18

Description : mitochondrial editing factor 18


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G19020
Cluster HCCA cluster: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000968001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01008173001 No alias No description available 0.03 Gene family
GSVIVT01010654001 No alias No description available 0.05 Gene family
GSVIVT01015233001 No alias No description available 0.04 Gene family
GSVIVT01018597001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01023860001 No alias No description available 0.03 Gene family
GSVIVT01032394001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033004001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01033837001 No alias No description available 0.02 Gene family
GSVIVT01036511001 No alias No description available 0.03 Gene family
LOC_Os01g60250 Os01g0818200 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os01g62910 Os01g0848300 No description available 0.03 Gene family
LOC_Os07g39090 Os07g0578800,... 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_59148g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g006920.3.1 Solyc01g006920.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc01g091610.1.1 Solyc01g091610.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc01g100800.2.1 Solyc01g100800.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g093380.1.1 Solyc02g093380.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc03g063160.1.1 Solyc03g063160.1 No description available 0.04 Gene family
Solyc04g064750.2.1 Solyc04g064750.2 No description available 0.03 Gene family
Solyc05g012630.1.1 Solyc05g012630.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.03 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc09g007040.1.1 Solyc09g007040.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc09g010070.1.1 Solyc09g010070.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.04 Gene family
Solyc11g067210.1.1 Solyc11g067210.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d022224 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d028422 GRMZM2G019689 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d050938 GRMZM2G163396 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0009410 response to xenobiotic stimulus RCA Arabidopsis.org
BP GO:0009560 embryo sac egg cell differentiation RCA Arabidopsis.org
BP GO:0048522 positive regulation of cellular process RCA Arabidopsis.org
BP GO:0080156 mitochondrial mRNA modification IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 139 184
IPR002885 Pentatricopeptide_repeat 510 554
IPR002885 Pentatricopeptide_repeat 400 447
IPR002885 Pentatricopeptide_repeat 109 138
IPR002885 Pentatricopeptide_repeat 581 605
IPR002885 Pentatricopeptide_repeat 78 100
IPR002885 Pentatricopeptide_repeat 375 396
IPR002885 Pentatricopeptide_repeat 478 498
IPR002885 Pentatricopeptide_repeat 240 269
IPR002885 Pentatricopeptide_repeat 212 238
IPR002885 Pentatricopeptide_repeat 271 300
No external refs found!