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  5. Nbi_g30721

Nbi_g30721 (CHM, MSH1, ATMSH1, CHM1)


Aliases : CHM, MSH1, ATMSH1, CHM1

Description : regulatory protein *(MSH1) of genome stability maintenance & original description: none


Gene families : OG0005890 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005890_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g30721

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00125380 CHM, MSH1,... Cell cycle.organelle machineries.DNA replication.genome... 0.02 OrthoFinder output from all 47 species
AT3G24320 CHM, MSH1, ATMSH1, CHM1 MUTL protein homolog 1 0.03 OrthoFinder output from all 47 species
Ala_g06278 CHM, MSH1, ATMSH1, CHM1 regulatory protein *(MSH1) of genome stability... 0.03 OrthoFinder output from all 47 species
Aspi01Gene61107.t1 CHM, MSH1,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.1Z321900.1 CHM, MSH1,... not classified & original description: pacid=50632816... 0.04 OrthoFinder output from all 47 species
MA_10429042g0010 CHM, MSH1, ATMSH1, CHM1 DNA mismatch repair protein MSH1, mitochondrial... 0.03 OrthoFinder output from all 47 species
Smo77583 CHM, MSH1, ATMSH1, CHM1 Cell cycle.organelle machineries.DNA replication.genome... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006298 mismatch repair IEA Interproscan
MF GO:0030983 mismatched DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
InterPro domains Description Start Stop
IPR007695 DNA_mismatch_repair_MutS-lik_N 213 305
IPR000432 DNA_mismatch_repair_MutS_C 856 1036
No external refs found!