AT5G16715 (EMB2247)


Aliases : EMB2247

Description : ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases


Gene families : OG_01_0000880 (Gene family) Phylogenetic Tree(s): OG0000880_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G16715
Cluster HCCA cluster: Cluster_192

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000402.37 No alias 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.03 Gene family
Cpa|evm.model.tig00001130.5 No alias 29.1.9 protein.aa activation.valine-tRNA ligase Required... 0.01 Gene family
Cre07.g350500 No alias 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.12 Gene family
Cre12.g537100 No alias 29.1.9 protein.aa activation.valine-tRNA ligase Required... 0.02 Gene family
GSVIVT01030775001 No alias 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.02 Gene family
GSVIVT01030776001 No alias 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.01 Gene family
LOC_Os07g06940 Os07g0163500 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.06 Gene family
MA_374514g0010 No alias 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.07 Gene family
Solyc12g019095.1.1 Solyc12g019095.1 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.1 Gene family
Solyc12g019110.2.1 Solyc12g019110.2 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.15 Gene family
Zm00001d007905 GRMZM5G871297 29.1.9 protein.aa activation.valine-tRNA ligase embryo... 0.1 Gene family

Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity ISS Arabidopsis.org
MF GO:0005524 ATP binding ISS Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
BP GO:0006364 rRNA processing RCA Arabidopsis.org
BP GO:0006399 tRNA metabolic process RCA Arabidopsis.org
BP GO:0006418 tRNA aminoacylation for protein translation ISS Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009570 chloroplast stroma IDA Arabidopsis.org
BP GO:0009658 chloroplast organization RCA Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy IMP Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy RCA Arabidopsis.org
BP GO:0009793 embryo development ending in seed dormancy NAS Arabidopsis.org
BP GO:0010027 thylakoid membrane organization RCA Arabidopsis.org
BP GO:0010103 stomatal complex morphogenesis RCA Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Arabidopsis.org
BP GO:0016226 iron-sulfur cluster assembly RCA Arabidopsis.org
BP GO:0016556 mRNA modification RCA Arabidopsis.org
BP GO:0045036 protein targeting to chloroplast RCA Arabidopsis.org
BP GO:0048481 plant ovule development RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 694 835
IPR002300 aa-tRNA-synth_Ia 80 637
IPR019499 Val-tRNA_synth_tRNA-bd 901 965
No external refs found!