AT5G16180 (ATCRS1, CRS1)


Aliases : ATCRS1, CRS1

Description : ortholog of maize chloroplast splicing factor CRS1


Gene families : OG_01_0000682 (Gene family) Phylogenetic Tree(s): OG0000682_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G16180
Cluster HCCA cluster: Cluster_206

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018109001 No alias 35.2 not assigned.unknown Encodes a CRM domain protein... 0.03 Gene family
GSVIVT01031001001 No alias 27.1.1 RNA.processing.splicing ortholog of maize... 0.02 Gene family
GSVIVT01032542001 No alias 35.2 not assigned.unknown Encodes a protein containing a... 0.03 Gene family
LOC_Os04g39060 Os04g0464800 35.2 not assigned.unknown Encodes a protein containing a... 0.04 Gene family
LOC_Os09g19850 Os09g0363100 35.2 not assigned.unknown CRS1 / YhbY (CRM)... 0.03 Gene family
LOC_Os11g37990 Os11g0592400 35.2 not assigned.unknown Encodes a CRM domain protein... 0.04 Gene family
MA_10432072g0010 No alias 35.2 not assigned.unknown Encodes a CRM domain protein... 0.03 Gene family
MA_130902g0010 No alias 35.2 not assigned.unknown Encodes a protein containing a... 0.04 Gene family
Smo120007 PACid_15411575 35.2 not assigned.unknown CRS1 / YhbY (CRM)... 0.03 Gene family
Smo412905 PACid_15415336 35.2 not assigned.unknown CRS1 / YhbY (CRM)... 0.02 Gene family
Solyc03g119450.3.1 Solyc03g119450.3 33.99 development.unspecified embryo defective 1865 (EMB1865) 0.06 Gene family
Solyc07g039500.3.1 Solyc07g039500.3 No description available 0.04 Gene family
Solyc09g083350.3.1 Solyc09g083350.3 35.2 not assigned.unknown Encodes a CRM domain protein... 0.03 Gene family
Zm00001d020230 GRMZM2G142740 35.2 not assigned.unknown CRS1 / YhbY (CRM)... 0.03 Gene family
Zm00001d032373 GRMZM2G078412 27.1.1 RNA.processing.splicing ortholog of maize... 0.03 Gene family
Zm00001d038922 GRMZM5G813259 33.99 development.unspecified embryo defective 1865 (EMB1865) 0.02 Gene family

Type GO Term Name Evidence Source
BP GO:0000373 Group II intron splicing IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 572 659
IPR001890 RNA-binding_CRM 361 445
IPR001890 RNA-binding_CRM 207 290
No external refs found!