AT5G15850 (COL1, ATCOL1)


Aliases : COL1, ATCOL1

Description : CONSTANS-like 1


Gene families : OG_01_0000267 (Gene family) Phylogenetic Tree(s): OG0000267_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G15850
Cluster HCCA cluster: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
Cre06.g278159 No alias 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.02 Gene family
Cre12.g534100 No alias No description available 0.02 Gene family
GSVIVT01029107001 No alias 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.07 Gene family
GSVIVT01036037001 No alias 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.03 Gene family
GSVIVT01036499001 No alias No description available 0.09 Gene family
LOC_Os02g39710 Os02g0610500 33.99 development.unspecified Homologous to the... 0.05 Gene family
LOC_Os06g44450 Os06g0654900 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.02 Gene family
LOC_Os10g41100 Os10g0560400 No description available 0.03 Gene family
Smo185898 PACid_15408628 No description available 0.14 Gene family
Solyc02g089540.3.1 Solyc02g089540.3 33.99 development.unspecified Homologous to the... 0.06 Gene family
Solyc07g006630.3.1 Solyc07g006630.3 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.03 Gene family
Zm00001d000176 GRMZM2G004483 No description available 0.06 Gene family
Zm00001d003162 GRMZM2G095598 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.03 Gene family
Zm00001d025770 No alias 27.3.7 RNA.regulation of transcription.C2C2(Zn) CO-like,... 0.05 Gene family
Zm00001d029885 GRMZM2G154580 No description available 0.04 Gene family

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006281 DNA repair RCA Arabidopsis.org
BP GO:0007623 circadian rhythm IMP Arabidopsis.org
MF GO:0008270 zinc ion binding ISS Arabidopsis.org
BP GO:0009909 regulation of flower development IMP Arabidopsis.org
BP GO:0010100 negative regulation of photomorphogenesis RCA Arabidopsis.org
MF GO:0042802 identical protein binding IPI Arabidopsis.org
BP GO:0048608 reproductive structure development RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR010402 CCT_domain 286 328
IPR000315 Znf_B-box 52 97
No external refs found!