AT5G13960 (SDG33, SUVH4, KYP)


Aliases : SDG33, SUVH4, KYP

Description : SU(VAR)3-9 homolog 4


Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G13960
Cluster HCCA cluster: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT5G04940 SUVH1 SU(VAR)3-9 homolog 1 0.03 Gene family
LOC_Os05g41172 Os05g0490700 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
LOC_Os07g25450 Os07g0435900 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Solyc02g094520.3.1 Solyc02g094520.3 27.3.69 RNA.regulation of transcription.SET-domain... 0.06 Gene family
Zm00001d011956 GRMZM2G054380 27.3.69 RNA.regulation of transcription.SET-domain... 0.06 Gene family

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization RCA Arabidopsis.org
BP GO:0000911 cytokinesis by cell plate formation RCA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006260 DNA replication RCA Arabidopsis.org
BP GO:0006270 DNA replication initiation RCA Arabidopsis.org
BP GO:0006275 regulation of DNA replication RCA Arabidopsis.org
BP GO:0006306 DNA methylation RCA Arabidopsis.org
BP GO:0006342 chromatin silencing RCA Arabidopsis.org
BP GO:0006346 methylation-dependent chromatin silencing RCA Arabidopsis.org
BP GO:0007267 cell-cell signaling RCA Arabidopsis.org
BP GO:0008283 cell proliferation RCA Arabidopsis.org
MF GO:0008327 methyl-CpG binding IDA Arabidopsis.org
BP GO:0009616 virus induced gene silencing RCA Arabidopsis.org
BP GO:0009640 photomorphogenesis RCA Arabidopsis.org
BP GO:0009855 determination of bilateral symmetry RCA Arabidopsis.org
BP GO:0010014 meristem initiation RCA Arabidopsis.org
BP GO:0010073 meristem maintenance RCA Arabidopsis.org
BP GO:0010216 maintenance of DNA methylation IDA Arabidopsis.org
BP GO:0010267 production of ta-siRNAs involved in RNA interference RCA Arabidopsis.org
MF GO:0010385 double-stranded methylated DNA binding IDA Arabidopsis.org
MF GO:0010428 methyl-CpNpG binding IDA Arabidopsis.org
MF GO:0010429 methyl-CpNpN binding IDA Arabidopsis.org
BP GO:0016567 protein ubiquitination RCA Arabidopsis.org
BP GO:0016571 histone methylation IDA Arabidopsis.org
BP GO:0016571 histone methylation RCA Arabidopsis.org
BP GO:0016572 histone phosphorylation RCA Arabidopsis.org
BP GO:0016579 protein deubiquitination RCA Arabidopsis.org
BP GO:0018022 peptidyl-lysine methylation IDA Arabidopsis.org
BP GO:0031047 gene silencing by RNA RCA Arabidopsis.org
BP GO:0031048 chromatin silencing by small RNA RCA Arabidopsis.org
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA RCA Arabidopsis.org
BP GO:0045893 positive regulation of transcription, DNA-templated RCA Arabidopsis.org
MF GO:0046974 histone methyltransferase activity (H3-K9 specific) IDA Arabidopsis.org
BP GO:0051567 histone H3-K9 methylation IMP Arabidopsis.org
BP GO:0051567 histone H3-K9 methylation RCA Arabidopsis.org
BP GO:0051726 regulation of cell cycle RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 337 438
IPR001214 SET_dom 457 594
IPR003105 SRA_YDG 148 306
No external refs found!