AT5G13730 (SIGD, SIG4)


Aliases : SIGD, SIG4

Description : sigma factor 4


Gene families : OG_01_0001192 (Gene family) Phylogenetic Tree(s): OG0001192_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G13730
Cluster HCCA cluster: Cluster_265

Target Alias Description ECC score Gene Family Method Actions
Cre03.g194950 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
GSVIVT01019326001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
GSVIVT01025717001 No alias No description available 0.03 Gene family
GSVIVT01032193001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
GSVIVT01035330001 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.1 Gene family
LOC_Os03g16430 Os03g0271100 27.3.85 RNA.regulation of transcription.sigma like plant... 0.1 Gene family
LOC_Os11g26160 Os11g0448400 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
MA_10429585g0010 No alias 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc01g081490.3.1 Solyc01g081490.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.02 Gene family
Solyc01g087690.2.1 Solyc01g087690.2 27.3.85 RNA.regulation of transcription.sigma like plant... 0.08 Gene family
Solyc08g065970.3.1 Solyc08g065970.3 27.3.85 RNA.regulation of transcription.sigma like plant... 0.04 Gene family
Solyc09g008040.3.1 Solyc09g008040.3 No description available 0.06 Gene family
Zm00001d028585 GRMZM2G003182,... 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family
Zm00001d049160 GRMZM2G143392 27.3.85 RNA.regulation of transcription.sigma like plant... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0000023 maltose metabolic process RCA Arabidopsis.org
MF GO:0003677 DNA binding ISS Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity ISS Arabidopsis.org
BP GO:0006098 pentose-phosphate shunt RCA Arabidopsis.org
BP GO:0006352 DNA-templated transcription, initiation TAS Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
BP GO:0016556 mRNA modification RCA Arabidopsis.org
MF GO:0016987 sigma factor activity ISS Arabidopsis.org
BP GO:0019252 starch biosynthetic process RCA Arabidopsis.org
BP GO:0071482 cellular response to light stimulus IEP Arabidopsis.org
BP GO:2001141 regulation of RNA biosynthetic process IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 185 252
IPR007630 RNA_pol_sigma70_r4 351 404
IPR007624 RNA_pol_sigma70_r3 262 338
No external refs found!