AT5G12400


Description : DNA binding;zinc ion binding;DNA binding


Gene families : OG_01_0003405 (Gene family) Phylogenetic Tree(s): OG0003405_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G12400
Cluster HCCA cluster: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01031411001 No alias 27.3.67 RNA.regulation of transcription.putative... 0.14 Gene family
GSVIVT01037231001 No alias 27.3.63 RNA.regulation of transcription.PHD finger... 0.1 Gene family
LOC_Os07g46690 Os07g0661500,... 27.3.63 RNA.regulation of transcription.PHD finger... 0.06 Gene family
LOC_Os11g05130 Os11g0148700 27.3.67 RNA.regulation of transcription.putative... 0.05 Gene family
MA_10689g0010 No alias 29.5 protein.degradation metalloendopeptidaseszinc ion... 0.03 Gene family
Solyc11g065160.2.1 Solyc11g065160.2 27.3.63 RNA.regulation of transcription.PHD finger... 0.21 Gene family
Solyc11g066780.2.1 Solyc11g066780.2 27.3.67 RNA.regulation of transcription.putative... 0.06 Gene family
Zm00001d004925 GRMZM2G403562 29.5 protein.degradation metalloendopeptidaseszinc ion... 0.13 Gene family
Zm00001d023391 GRMZM2G314661 29.5 protein.degradation metalloendopeptidaseszinc ion... 0.11 Gene family

Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Arabidopsis.org
MF GO:0003677 DNA binding ISS Arabidopsis.org
CC GO:0005634 nucleus ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
BP GO:0007155 cell adhesion RCA Arabidopsis.org
BP GO:0010090 trichome morphogenesis RCA Arabidopsis.org
BP GO:0010228 vegetative to reproductive phase transition of meristem RCA Arabidopsis.org
BP GO:0016926 protein desumoylation RCA Arabidopsis.org
BP GO:0042546 cell wall biogenesis RCA Arabidopsis.org
BP GO:0044036 cell wall macromolecule metabolic process RCA Arabidopsis.org
BP GO:0045010 actin nucleation RCA Arabidopsis.org
BP GO:0048765 root hair cell differentiation RCA Arabidopsis.org
BP GO:0050665 hydrogen peroxide biosynthetic process RCA Arabidopsis.org
BP GO:0071555 cell wall organization RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR018501 DDT_dom 416 468
IPR019787 Znf_PHD-finger 611 653
No external refs found!