AT5G11200


Description : DEAD/DEAH box RNA helicase family protein


Gene families : OG_01_0003798 (Gene family) Phylogenetic Tree(s): OG0003798_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G11200
Cluster HCCA cluster: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01035843001 No alias 28.1 DNA.synthesis/chromatin structure DEAD/DEAH box RNA... 0.03 Gene family
Solyc06g066060.3.1 Solyc06g066060.3 28.1 DNA.synthesis/chromatin structure DEAD/DEAH box RNA... 0.06 Gene family
Solyc08g061000.3.1 Solyc08g061000.3 28.1 DNA.synthesis/chromatin structure DEAD/DEAH box RNA... 0.02 Gene family
Zm00001d009761 GRMZM5G892645 28.1 DNA.synthesis/chromatin structure DEAD/DEAH box RNA... 0.07 Gene family

Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IDA Arabidopsis.org
MF GO:0003697 single-stranded DNA binding IDA Arabidopsis.org
MF GO:0003725 double-stranded RNA binding IDA Arabidopsis.org
MF GO:0004004 ATP-dependent RNA helicase activity IDA Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
MF GO:0008026 ATP-dependent helicase activity ISS Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
MF GO:0016887 ATPase activity IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 71 236
IPR001650 Helicase_C 276 383
No external refs found!