AT5G11190 (SHN3)


Aliases : SHN3

Description : Integrase-type DNA-binding superfamily protein


Gene families : OG_01_0000000 (Gene family) Phylogenetic Tree(s): OG0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G11190
Cluster HCCA cluster: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
AT1G28160 No alias Integrase-type DNA-binding superfamily protein 0.01 Gene family
Zm00001d002760 GRMZM2G475678 No description available 0.01 Gene family
Zm00001d002761 GRMZM5G805505 No description available 0.01 Gene family
Zm00001d031673 GRMZM2G309731 No description available 0.01 Gene family
Zm00001d038320 GRMZM2G100727 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.01 Gene family
Zm00001d045204 GRMZM2G301860 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.01 Gene family
Zm00001d052229 GRMZM2G029323 27.3.3 RNA.regulation of transcription.AP2/EREBP,... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity IDA Arabidopsis.org
MF GO:0003700 DNA-binding transcription factor activity ISS Arabidopsis.org
CC GO:0005634 nucleus ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 6 55
No external refs found!