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  5. Nbi_g30006

Nbi_g30006


Description : Trihelix-type transcription factor & original description: none


Gene families : OG0002113 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002113_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g30006

Target Alias Description ECC score Gene Family Method Actions
Adi_g020539 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Als_g00745 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04046 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g33018 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0002.g001295 No alias Trihelix-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Cba_g07494 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34228 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19589 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g28429 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00971 No alias Trihelix-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0013.g005682 No alias Trihelix-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0181.g024830 No alias Trihelix-type transcription factor & original... 0.02 OrthoFinder output from all 47 species
Spa_g04985 No alias Trihelix-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g29046 No alias Trihelix-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e024316_P001 Zm00001e024316 transcription factor (Trihelix) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
InterPro domains Description Start Stop
IPR044822 Myb_DNA-bind_4 23 114
No external refs found!