AT5G08450


Description : FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 34444 Blast hits to 20801 proteins in 1175 species: Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses - 208; Other Eukaryotes - 10599 (source: NCBI BLink).


Gene families : OG_01_0005556 (Gene family) Phylogenetic Tree(s): OG0005556_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G08450
Cluster HCCA cluster: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000253001 No alias 35.2 not assigned.unknown 0.07 Gene family
LOC_Os07g29450 Os07g0477500 35.2 not assigned.unknown 0.03 Gene family
MA_18805g0010 No alias No description available 0.03 Gene family
Solyc05g056340.3.1 Solyc05g056340.3 35.2 not assigned.unknown 0.04 Gene family
Zm00001d006789 GRMZM2G464000 35.2 not assigned.unknown 0.02 Gene family
Zm00001d050244 GRMZM2G146118 35.2 not assigned.unknown 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
BP GO:0006486 protein glycosylation RCA Arabidopsis.org
BP GO:0007059 chromosome segregation RCA Arabidopsis.org
BP GO:0007062 sister chromatid cohesion RCA Arabidopsis.org
BP GO:0007129 synapsis RCA Arabidopsis.org
BP GO:0007131 reciprocal meiotic recombination RCA Arabidopsis.org
BP GO:0009737 response to abscisic acid IMP Arabidopsis.org
BP GO:0009845 seed germination IMP Arabidopsis.org
BP GO:0009887 animal organ morphogenesis RCA Arabidopsis.org
BP GO:0009888 tissue development RCA Arabidopsis.org
BP GO:0009908 flower development IMP Arabidopsis.org
BP GO:0010332 response to gamma radiation RCA Arabidopsis.org
BP GO:0010413 glucuronoxylan metabolic process RCA Arabidopsis.org
BP GO:0010638 positive regulation of organelle organization RCA Arabidopsis.org
BP GO:0016575 histone deacetylation IDA Arabidopsis.org
BP GO:0016926 protein desumoylation RCA Arabidopsis.org
BP GO:0032204 regulation of telomere maintenance RCA Arabidopsis.org
BP GO:0032504 multicellular organism reproduction RCA Arabidopsis.org
BP GO:0033044 regulation of chromosome organization RCA Arabidopsis.org
BP GO:0042138 meiotic DNA double-strand break formation RCA Arabidopsis.org
BP GO:0043247 telomere maintenance in response to DNA damage RCA Arabidopsis.org
BP GO:0045132 meiotic chromosome segregation RCA Arabidopsis.org
BP GO:0045492 xylan biosynthetic process RCA Arabidopsis.org
BP GO:0080186 developmental vegetative growth IMP Arabidopsis.org
BP GO:1902074 response to salt IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013951 Rxt3 603 646
No external refs found!