AT5G08300


Description : Succinyl-CoA ligase, alpha subunit


Gene families : OG_01_0003395 (Gene family) Phylogenetic Tree(s): OG0003395_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G08300
Cluster HCCA cluster: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000254.114 No alias 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.02 Gene family
Cre03.g193850 No alias 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.11 Gene family
GSVIVT01029337001 No alias 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.06 Gene family
LOC_Os07g38970 Os07g0577700 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.09 Gene family
Smo405593 PACid_15414101 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.02 Gene family
Solyc01g007910.3.1 Solyc01g007910.3 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.12 Gene family
Solyc02g005350.3.1 Solyc02g005350.3 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.04 Gene family
Zm00001d006667 GRMZM2G039251 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.17 Gene family
Zm00001d021908 GRMZM2G072054 8.1.6 TCA / org transformation.TCA.succinyl-CoA ligase... 0.1 Gene family

Type GO Term Name Evidence Source
MF GO:0004776 succinate-CoA ligase (GDP-forming) activity ISS Arabidopsis.org
MF GO:0005507 copper ion binding IDA Arabidopsis.org
CC GO:0005618 cell wall IDA Arabidopsis.org
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
BP GO:0006094 gluconeogenesis RCA Arabidopsis.org
BP GO:0006096 glycolytic process RCA Arabidopsis.org
BP GO:0006511 ubiquitin-dependent protein catabolic process RCA Arabidopsis.org
BP GO:0008152 metabolic process ISS Arabidopsis.org
BP GO:0009627 systemic acquired resistance RCA Arabidopsis.org
BP GO:0009651 response to salt stress RCA Arabidopsis.org
BP GO:0009744 response to sucrose RCA Arabidopsis.org
BP GO:0009749 response to glucose RCA Arabidopsis.org
BP GO:0009750 response to fructose RCA Arabidopsis.org
BP GO:0009853 photorespiration RCA Arabidopsis.org
BP GO:0034976 response to endoplasmic reticulum stress RCA Arabidopsis.org
BP GO:0046686 response to cadmium ion IEP Arabidopsis.org
BP GO:0046686 response to cadmium ion RCA Arabidopsis.org
MF GO:0046872 metal ion binding IDA Arabidopsis.org
BP GO:0051788 response to misfolded protein RCA Arabidopsis.org
BP GO:0080129 proteasome core complex assembly RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003781 CoA-bd 55 148
IPR005811 CoA_ligase 201 321
No external refs found!