AT5G05970 (NEDD1)


Aliases : NEDD1

Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0002287 (Gene family) Phylogenetic Tree(s): OG0002287_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G05970
Cluster HCCA cluster: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000144.81 No alias 27.1 RNA.processing a WD40 repeat protein related to the... 0.01 Gene family
GSVIVT01016463001 No alias 27.1 RNA.processing a WD40 repeat protein related to the... 0.02 Gene family
LOC_Os09g09470 Os09g0267500 27.1 RNA.processing a WD40 repeat protein related to the... 0.05 Gene family
Solyc03g079920.3.1 Solyc03g079920.3 27.1 RNA.processing a WD40 repeat protein related to the... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Arabidopsis.org
BP GO:0000919 cell plate assembly IMP Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005828 kinetochore microtubule IDA Arabidopsis.org
BP GO:0009553 embryo sac development IMP Arabidopsis.org
BP GO:0009555 pollen development IMP Arabidopsis.org
BP GO:0032467 positive regulation of cytokinesis IMP Arabidopsis.org
BP GO:0060236 regulation of mitotic spindle organization IMP Arabidopsis.org
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Arabidopsis.org
BP GO:2000694 regulation of phragmoplast microtubule organization IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 127 207
IPR001680 WD40_repeat 34 70
No external refs found!