AT5G05280

Description : RING/U-box superfamily protein

Gene families : OG_01_0000002 (Gene family) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT5G05280
Cluster	HCCA cluster: Cluster_118

Target	Alias	Description	ECC score	Gene Family Method
AT1G04360	No alias	RING/U-box superfamily protein	0.03	Gene family
AT1G22500	No alias	RING/U-box superfamily protein	0.02	Gene family
AT1G35330	No alias	RING/U-box superfamily protein	0.03	Gene family
AT2G34000	No alias	RING/U-box superfamily protein	0.02	Gene family
AT2G42360	No alias	RING/U-box superfamily protein	0.04	Gene family
AT2G47560	No alias	RING/U-box superfamily protein	0.03	Gene family
AT3G18773	No alias	RING/U-box superfamily protein	0.02	Gene family
AT3G62690	ATL5	AtL5	0.03	Gene family
AT4G38140	No alias	RING/U-box superfamily protein	0.02	Gene family
AT5G42200	No alias	RING/U-box superfamily protein	0.03	Gene family
Cpa\|evm.model.tig00000792.59	No alias	No description available	0.01	Gene family
GSVIVT01008754001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
GSVIVT01009096001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
GSVIVT01009098001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
GSVIVT01015682001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
GSVIVT01019530001	No alias	35.2 not assigned.unknown RING/U-box superfamily protein	0.03	Gene family
GSVIVT01027769001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
GSVIVT01028038001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
GSVIVT01028306001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
GSVIVT01032684001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
LOC_Os01g61470	Os01g0830900	No description available	0.02	Gene family
LOC_Os02g33720	Os02g0541500	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
LOC_Os02g35329	Os02g0559800	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
LOC_Os02g36300	Os02g0572200	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
LOC_Os02g36330	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os02g43120	Os02g0645000	No description available	0.02	Gene family
LOC_Os02g57460	Os02g0820200	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
LOC_Os03g44636	Os03g0648600	No description available	0.03	Gene family
LOC_Os04g49550	Os04g0585000	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os05g11860	No alias	No description available	0.04	Gene family
LOC_Os05g39260	Os05g0468900	No description available	0.03	Gene family
LOC_Os06g11450	Os06g0218300	No description available	0.02	Gene family
LOC_Os06g16060	Os06g0271600	No description available	0.03	Gene family
LOC_Os06g34530	Os06g0536100	No description available	0.04	Gene family
LOC_Os06g34560	Os06g0536466,...	No description available	0.03	Gene family
LOC_Os06g34610	Os06g0537100	No description available	0.02	Gene family
LOC_Os08g44950	Os08g0563500	No description available	0.04	Gene family
LOC_Os09g37050	Os09g0542600	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_10244600g0010	No alias	No description available	0.02	Gene family
MA_10260361g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_10426834g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_10429624g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_10436028g0020	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
MA_1115518g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_1143g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_126287g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_17390g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_181940g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_222729g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
MA_289646g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
MA_3380g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
MA_41514g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_42543g0010	No alias	No description available	0.02	Gene family
MA_69343g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_77628g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_786911g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_80729g0030	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_96368g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc01g081040.3.1	Solyc01g081040.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Solyc01g098725.1.1	Solyc01g098725.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING E3...	0.02	Gene family
Solyc02g083400.3.1	Solyc02g083400.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Solyc03g123680.1.1	Solyc03g123680.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc04g014220.1.1	Solyc04g014220.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Solyc04g082690.1.1	Solyc04g082690.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8	0.03	Gene family
Solyc05g005790.3.1	Solyc05g005790.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Solyc07g053420.3.1	Solyc07g053420.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc08g076830.1.1	Solyc08g076830.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Solyc09g075320.1.1	Solyc09g075320.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Solyc10g081780.2.1	Solyc10g081780.2	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Solyc11g005290.2.1	Solyc11g005290.2	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Solyc11g005320.1.1	Solyc11g005320.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
Solyc11g010330.2.1	Solyc11g010330.2	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc12g009065.1.1	Solyc12g009065.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc12g094690.1.1	Solyc12g094690.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8	0.03	Gene family
Zm00001d002535	GRMZM2G146847	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d003497	GRMZM2G171277	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d007609	GRMZM2G041549	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d013110	GRMZM2G028188	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d016104	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d016142	GRMZM2G324111	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d016721	GRMZM2G451308	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Zm00001d017645	GRMZM2G057789	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8	0.02	Gene family
Zm00001d017678	GRMZM2G004480	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
Zm00001d018122	GRMZM2G323013	No description available	0.02	Gene family
Zm00001d029996	GRMZM2G042538	No description available	0.04	Gene family
Zm00001d031880	No alias	No description available	0.03	Gene family
Zm00001d034369	GRMZM2G135011	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d037300	GRMZM2G324375	No description available	0.03	Gene family
Zm00001d037533	GRMZM2G021796	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Zm00001d045051	GRMZM2G478553	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
Zm00001d051833	GRMZM5G885045	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.09	Gene family
Zm00001d051894	GRMZM2G146228	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Zm00001d052268	GRMZM2G080079	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IDA	Arabidopsis.org
MF	GO:0005488	binding	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Arabidopsis.org
BP	GO:0009555	pollen development	IMP	Arabidopsis.org
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009900	dehiscence	None	Extended
BP	GO:0009901	anther dehiscence	IMP	Arabidopsis.org
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010565	regulation of cellular ketone metabolic process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016567	protein ubiquitination	IDA	Arabidopsis.org
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019216	regulation of lipid metabolic process	None	Extended
BP	GO:0019217	regulation of fatty acid metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032350	regulation of hormone metabolic process	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0042304	regulation of fatty acid biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0046885	regulation of hormone biosynthetic process	None	Extended
BP	GO:0046890	regulation of lipid biosynthetic process	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0048229	gametophyte development	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048443	stamen development	IMP	Arabidopsis.org
BP	GO:0048609	multicellular organismal reproductive process	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0062012	regulation of small molecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0080140	regulation of jasmonic acid metabolic process	None	Extended
BP	GO:0080141	regulation of jasmonic acid biosynthetic process	IMP	Arabidopsis.org
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	112	155

External Links

No external refs found!

AT5G05280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation