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  5. Nbi_g29528

Nbi_g29528


Description : not classified & original description: none


Gene families : OG0000125 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000125_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g29528
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AT3G47250 No alias Plant protein of unknown function (DUF247) 0.05 OrthoFinder output from all 47 species
Ala_g06779 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g13692 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g26067 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g37330 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g03031 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19108.t1 Aspi01Gene19108 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57926.t1 Aspi01Gene57926 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G038500.1 Ceric.11G038500 not classified & original description: pacid=50595115... 0.04 OrthoFinder output from all 47 species
Dac_g23793 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01014793001 No alias UPF0481 protein At3g47200 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os01g38120.1 LOC_Os01g38120 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os05g15230.1 LOC_Os05g15230 UPF0481 protein At3g47200 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Msp_g14823 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g07431 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g16372 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g66075 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
MF GO:0035673 oligopeptide transmembrane transporter activity IEP HCCA
MF GO:0042887 amide transmembrane transporter activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1904680 peptide transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR004158 DUF247_pln 29 434
No external refs found!