AT5G04310


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0000238 (Gene family) Phylogenetic Tree(s): OG0000238_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT5G04310
Cluster HCCA cluster: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AT3G07010 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT3G24670 No alias Pectin lyase-like superfamily protein 0.02 Gene family
AT5G48900 No alias Pectin lyase-like superfamily protein 0.02 Gene family
GSVIVT01007582001 No alias 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family
Solyc05g014000.3.1 Solyc05g014000.3 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d000216 GRMZM2G323418 10.6.3 cell wall.degradation.pectate lyases and... 0.02 Gene family
Zm00001d036158 GRMZM2G364349 10.6.3 cell wall.degradation.pectate lyases and... 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0005886 plasma membrane ISM Arabidopsis.org
MF GO:0030570 pectate lyase activity ISS Arabidopsis.org
CC GO:0031225 anchored component of membrane TAS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002022 Pec_lyase 173 358
No external refs found!