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  5. Nbi_g29349

Nbi_g29349 (AtTRM82, TRM82)


Aliases : AtTRM82, TRM82

Description : component *(TRM82) of TRM8-TRM82 tRNA guanosine-methyltransferase complex & original description: none


Gene families : OG0004680 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004680_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g29349

Target Alias Description ECC score Gene Family Method Actions
Als_g10821 AtTRM82, TRM82 component *(TRM82) of TRM8-TRM82 tRNA... 0.04 OrthoFinder output from all 47 species
Cba_g17473 AtTRM82, TRM82 component *(TRM82) of TRM8-TRM82 tRNA... 0.03 OrthoFinder output from all 47 species
Msp_g19025 AtTRM82, TRM82 component *(TRM82) of TRM8-TRM82 tRNA... 0.02 OrthoFinder output from all 47 species
Pnu_g13394 AtTRM82, TRM82 component *(TRM82) of TRM8-TRM82 tRNA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 139 174
IPR001680 WD40_repeat 194 226
IPR001680 WD40_repeat 55 86
No external refs found!