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  5. Nbi_g29048

Nbi_g29048 (LYC)


Aliases : LYC

Description : EC_5.5 intramolecular lyase & original description: none


Gene families : OG0004073 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g29048
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0182.g056455 LYC EC_5.5 intramolecular lyase & original description: CDS=1-1671 0.05 OrthoFinder output from all 47 species
Cre08.g358538 LYC Secondary metabolism.terpenoids.terpenoid... 0.01 OrthoFinder output from all 47 species
Sam_g14458 No alias EC_5.5 intramolecular lyase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc04g040190.1.1 LYC, Solyc04g040190 lycopene beta cyclase (LCY-b) 0.04 OrthoFinder output from all 47 species
Solyc06g074240.3.1 LYC, Solyc06g074240 lycopene beta cyclase (LCY-b) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0015291 secondary active transmembrane transporter activity IEP HCCA
MF GO:0015297 antiporter activity IEP HCCA
MF GO:0022804 active transmembrane transporter activity IEP HCCA
MF GO:0042910 xenobiotic transmembrane transporter activity IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA

No InterPro domains available for this sequence

No external refs found!