AT1G23230


Description : CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).


Gene families : OG_01_0006926 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006926_tree ,
OG_02_0005266 (LandPlants) Phylogenetic Tree(s): OG_02_0005266_tree ,
OG_03_0005449 (SeedPlants) Phylogenetic Tree(s): OG_03_0005449_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G23230
Cluster HCCA: Cluster_198

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00060p00196600 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
GSVIVT01011680001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
Gb_41520 No alias component MED23 of tail module of MEDIATOR transcription... 0.04 Archaeplastida
LOC_Os02g49992.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.07 Archaeplastida
MA_10430175g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_167665g0010 No alias Mediator of RNA polymerase II transcription subunit 23... 0.02 Archaeplastida
Mp1g05140.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.03 Archaeplastida
Pp3c27_2940V3.1 No alias No annotation 0.05 Archaeplastida
Smo76173 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
Solyc05g016440.3.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.08 Archaeplastida
Solyc05g016460.2.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.04 Archaeplastida
Zm00001e015737_P001 No alias component MED23 of tail module of MEDIATOR transcription... 0.08 Archaeplastida
AMTR_s00060p00196600 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.06 LandPlants
GSVIVT01011680001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 LandPlants
Gb_41520 No alias component MED23 of tail module of MEDIATOR transcription... 0.04 LandPlants
LOC_Os02g49992.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.05 LandPlants
MA_10430175g0010 No alias no hits & (original description: none) 0.03 LandPlants
MA_167665g0010 No alias Mediator of RNA polymerase II transcription subunit 23... 0.02 LandPlants
Mp1g05140.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.02 LandPlants
Pp3c27_2940V3.1 No alias No annotation 0.04 LandPlants
Smo76173 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.04 LandPlants
Solyc05g016440.3.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.08 LandPlants
Solyc05g016460.2.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.04 LandPlants
Zm00001e015737_P001 No alias component MED23 of tail module of MEDIATOR transcription... 0.07 LandPlants
AMTR_s00060p00196600 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.06 SeedPlants
GSVIVT01011680001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 SeedPlants
Gb_41520 No alias component MED23 of tail module of MEDIATOR transcription... 0.04 SeedPlants
LOC_Os02g49992.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.04 SeedPlants
MA_10430175g0010 No alias no hits & (original description: none) 0.03 SeedPlants
MA_167665g0010 No alias Mediator of RNA polymerase II transcription subunit 23... 0.02 SeedPlants
Solyc05g016440.3.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.07 SeedPlants
Solyc05g016460.2.1 No alias component MED23 of tail module of MEDIATOR transcription... 0.04 SeedPlants
Zm00001e015737_P001 No alias component MED23 of tail module of MEDIATOR transcription... 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006487 protein N-linked glycosylation RCA Interproscan
BP GO:0010413 glucuronoxylan metabolic process RCA Interproscan
BP GO:0045492 xylan biosynthetic process RCA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR021629 Mediator_Med23 684 1223
No external refs found!