AT1G23230

Description : CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23 (InterPro:IPR021629); Has 187 Blast hits to 184 proteins in 67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).

Gene families : OG_01_0006926 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006926_tree ,
OG_02_0005266 (LandPlants) Phylogenetic Tree(s): OG_02_0005266_tree ,
OG_03_0005449 (SeedPlants) Phylogenetic Tree(s): OG_03_0005449_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G23230
Cluster	HCCA: Cluster_198

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00060p00196600	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.06	Archaeplastida
GSVIVT01011680001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.08	Archaeplastida
Gb_41520	No alias	component MED23 of tail module of MEDIATOR transcription...	0.04	Archaeplastida
LOC_Os02g49992.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.07	Archaeplastida
MA_10430175g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
MA_167665g0010	No alias	Mediator of RNA polymerase II transcription subunit 23...	0.02	Archaeplastida
Mp1g05140.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.03	Archaeplastida
Pp3c27_2940V3.1	No alias	No annotation	0.05	Archaeplastida
Smo76173	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.05	Archaeplastida
Solyc05g016440.3.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.08	Archaeplastida
Solyc05g016460.2.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.04	Archaeplastida
Zm00001e015737_P001	No alias	component MED23 of tail module of MEDIATOR transcription...	0.08	Archaeplastida
AMTR_s00060p00196600	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.06	LandPlants
GSVIVT01011680001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.07	LandPlants
Gb_41520	No alias	component MED23 of tail module of MEDIATOR transcription...	0.04	LandPlants
LOC_Os02g49992.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.05	LandPlants
MA_10430175g0010	No alias	no hits & (original description: none)	0.03	LandPlants
MA_167665g0010	No alias	Mediator of RNA polymerase II transcription subunit 23...	0.02	LandPlants
Mp1g05140.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.02	LandPlants
Pp3c27_2940V3.1	No alias	No annotation	0.04	LandPlants
Smo76173	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.04	LandPlants
Solyc05g016440.3.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.08	LandPlants
Solyc05g016460.2.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.04	LandPlants
Zm00001e015737_P001	No alias	component MED23 of tail module of MEDIATOR transcription...	0.07	LandPlants
AMTR_s00060p00196600	evm_27.TU.AmTr_v1...	RNA biosynthesis.RNA polymerase II-dependent...	0.06	SeedPlants
GSVIVT01011680001	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.07	SeedPlants
Gb_41520	No alias	component MED23 of tail module of MEDIATOR transcription...	0.04	SeedPlants
LOC_Os02g49992.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.04	SeedPlants
MA_10430175g0010	No alias	no hits & (original description: none)	0.03	SeedPlants
MA_167665g0010	No alias	Mediator of RNA polymerase II transcription subunit 23...	0.02	SeedPlants
Solyc05g016440.3.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.07	SeedPlants
Solyc05g016460.2.1	No alias	component MED23 of tail module of MEDIATOR transcription...	0.04	SeedPlants
Zm00001e015737_P001	No alias	component MED23 of tail module of MEDIATOR transcription...	0.06	SeedPlants

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular anatomical structure	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006486	protein glycosylation	None	Extended
BP	GO:0006487	protein N-linked glycosylation	RCA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010383	cell wall polysaccharide metabolic process	None	Extended
BP	GO:0010410	hemicellulose metabolic process	None	Extended
BP	GO:0010413	glucuronoxylan metabolic process	RCA	Interproscan
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043413	macromolecule glycosylation	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044038	cell wall macromolecule biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0045491	xylan metabolic process	None	Extended
BP	GO:0045492	xylan biosynthetic process	RCA	Interproscan
BP	GO:0070085	glycosylation	None	Extended
BP	GO:0070589	cellular component macromolecule biosynthetic process	None	Extended
BP	GO:0070592	cell wall polysaccharide biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR021629	Mediator_Med23	684	1223

External Links

No external refs found!

AT1G23230

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation