MA_951956g0010


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0000013 (SeedPlants) Phylogenetic Tree(s): OG_03_0000013_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_951956g0010
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00025p00244880 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00071p00198520 evm_27.TU.AmTr_v1... Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00071p00198970 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.03 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
AT4G11880 AGL14 AGAMOUS-like 14 0.03 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.02 Archaeplastida
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01010221001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01014093001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os05g34940.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
MA_10432602g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_5917g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Pp3c12_22890V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Pp3c17_13070V3.1 No alias AGAMOUS-like 66 0.03 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
Smo5960 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc04g078300.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc08g067230.4.1 No alias No annotation 0.03 Archaeplastida
Solyc10g080030.2.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005705_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e012026_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e018811_P001 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e029170_P001 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e032487_P001 No alias transcription factor (MADS/AGL) 0.01 Archaeplastida
Zm00001e038096_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
AT3G30260 AGL79 AGAMOUS-like 79 0.02 LandPlants
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.02 LandPlants
GSVIVT01003861001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
GSVIVT01021534001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
Gb_28337 No alias MADS-box transcription factor 6 OS=Oryza sativa subsp.... 0.02 LandPlants
Gb_30604 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 LandPlants
LOC_Os04g23910.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
LOC_Os05g34940.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
MA_10432602g0010 No alias no hits & (original description: none) 0.03 LandPlants
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.01 LandPlants
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.02 LandPlants
Solyc02g091550.2.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Solyc03g114840.3.1 No alias transcription factor (MADS/AGL) 0.01 LandPlants
Solyc08g067230.4.1 No alias No annotation 0.02 LandPlants
Zm00001e032487_P001 No alias transcription factor (MADS/AGL) 0.01 LandPlants
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 SeedPlants
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 SeedPlants
Gb_30604 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
Gb_38920 No alias no hits & (original description: none) 0.01 SeedPlants
Gb_38922 No alias transcription factor (MADS/AGL) 0.01 SeedPlants
MA_13933g0010 No alias transcription factor (MADS/AGL) 0.03 SeedPlants
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.03 SeedPlants
Solyc08g067230.4.1 No alias No annotation 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 10 57
No external refs found!