AT4G37930 (STM, SHM1, SHMT1)


Aliases : STM, SHM1, SHMT1

Description : serine transhydroxymethyltransferase 1


Gene families : OG_01_0000425 (Gene family) Phylogenetic Tree(s): OG0000425_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G37930
Cluster HCCA cluster: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001130.31 No alias 25.1 C1-metabolism.glycine hydroxymethyltransferase... 0.03 Gene family
GSVIVT01003859001 No alias 25.1 C1-metabolism.glycine hydroxymethyltransferase... 0.13 Gene family
LOC_Os03g52840 Os03g0738400 25.1 C1-metabolism.glycine hydroxymethyltransferase... 0.09 Gene family
MA_99276g0010 No alias 25.1 C1-metabolism.glycine hydroxymethyltransferase... 0.09 Gene family
Smo270566 PACid_15421045 25.1 C1-metabolism.glycine hydroxymethyltransferase... 0.09 Gene family
Solyc02g091560.3.1 Solyc02g091560.3 25.1 C1-metabolism.glycine hydroxymethyltransferase... 0.22 Gene family

Type GO Term Name Evidence Source
MF GO:0004372 glycine hydroxymethyltransferase activity IDA Arabidopsis.org
MF GO:0004372 glycine hydroxymethyltransferase activity ISS Arabidopsis.org
MF GO:0004372 glycine hydroxymethyltransferase activity TAS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
CC GO:0005759 mitochondrial matrix ISS Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
BP GO:0006544 glycine metabolic process IDA Arabidopsis.org
BP GO:0006544 glycine metabolic process ISS Arabidopsis.org
BP GO:0006563 L-serine metabolic process IDA Arabidopsis.org
BP GO:0006563 L-serine metabolic process ISS Arabidopsis.org
BP GO:0007623 circadian rhythm IEP Arabidopsis.org
MF GO:0008266 poly(U) RNA binding IDA Arabidopsis.org
BP GO:0009409 response to cold IEP Arabidopsis.org
BP GO:0009409 response to cold RCA Arabidopsis.org
BP GO:0009416 response to light stimulus IEP Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0009534 chloroplast thylakoid IDA Arabidopsis.org
CC GO:0009570 chloroplast stroma IDA Arabidopsis.org
BP GO:0009626 plant-type hypersensitive response TAS Arabidopsis.org
BP GO:0009697 salicylic acid biosynthetic process RCA Arabidopsis.org
BP GO:0009814 defense response, incompatible interaction RCA Arabidopsis.org
BP GO:0009853 photorespiration IMP Arabidopsis.org
CC GO:0010319 stromule IDA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
BP GO:0019464 glycine decarboxylation via glycine cleavage system IMP Arabidopsis.org
BP GO:0019684 photosynthesis, light reaction RCA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
BP GO:0042742 defense response to bacterium RCA Arabidopsis.org
BP GO:0046686 response to cadmium ion IEP Arabidopsis.org
CC GO:0048046 apoplast IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 55 452
No external refs found!