Nbi_g28804 (UBP12)

Aliases : UBP12

Description : deubiquitinase *(UBP12-13) & original description: none

Gene families : OG0001048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001048_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g28804
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00140970	UBP13,...	Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AT5G06600	UBP12	ubiquitin-specific protease 12	0.05	OrthoFinder output from all 47 species
Adi_g109500	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g06794	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.05	OrthoFinder output from all 47 species
Aev_g21287	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g19646	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.07	OrthoFinder output from all 47 species
Als_g05134	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Als_g18908	UBP13	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g32969	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g04496	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g20270	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0018.g014866	UBP12	deubiquitinase *(UBP12-13) & original description: CDS=40-3402	0.06	OrthoFinder output from all 47 species
Azfi_s0078.g038193	UBP12	deubiquitinase *(UBP12-13) & original description: CDS=241-3615	0.05	OrthoFinder output from all 47 species
Cba_g76845	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.13G025300.1	UBP13, Ceric.13G025300	deubiquitinase *(UBP12-13) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.24G037500.1	UBP12, Ceric.24G037500	deubiquitinase *(UBP12-13) & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000217.46	UBP12	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021350.29	UBP13	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00021350.30	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
Cre07.g336200	UBP12	Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
Dcu_g08947	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.09	OrthoFinder output from all 47 species
Dcu_g46962	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g50110	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.08	OrthoFinder output from all 47 species
Dde_g25656	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g16398	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01022498001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
GSVIVT01034603001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.06	OrthoFinder output from all 47 species
GSVIVT01037528001	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
LOC_Os11g36470.1	UBP13, LOC_Os11g36470	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species
LOC_Os12g30540.1	UBP12, LOC_Os12g30540	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.03	OrthoFinder output from all 47 species
Len_g23299	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g40373	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Mp3g15430.1	UBP12	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.09	OrthoFinder output from all 47 species
Msp_g43590	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g40484	UBP12	deubiquitinase *(UBP12-13) & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g48499	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Ppi_g16380	UBP13	deubiquitinase *(UBP12-13) & original description: none	0.06	OrthoFinder output from all 47 species
Smo444302	UBP12	Protein degradation.peptidase families.cysteine-type...	0.03	OrthoFinder output from all 47 species
Solyc05g055090.4.1	UBP12, Solyc05g055090	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
Solyc10g081610.2.1	UBP12, Solyc10g081610	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.06	OrthoFinder output from all 47 species
Solyc11g006320.2.1	UBP12, Solyc11g006320	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.02	OrthoFinder output from all 47 species
Solyc11g071700.2.1	UBP12, Solyc11g071700	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.04	OrthoFinder output from all 47 species
Zm00001e017788_P001	UBP12, Zm00001e017788	ubiquitin protease (USP7). deubiquitinase (UBP12-13)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004843	cysteine-type deubiquitinase activity	IEA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein peptidase activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	deubiquitinase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	HCCA
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	HCCA
MF	GO:0004175	endopeptidase activity	IEP	HCCA
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	HCCA
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005543	phospholipid binding	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	HCCA
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0009966	regulation of signal transduction	IEP	HCCA
BP	GO:0010646	regulation of cell communication	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
BP	GO:0023051	regulation of signaling	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0032012	regulation of ARF protein signal transduction	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046578	regulation of Ras protein signal transduction	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051056	regulation of small GTPase mediated signal transduction	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA
MF	GO:0070001	aspartic-type peptidase activity	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140677	molecular function activator activity	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR024729	USP7_ICP0-binding_dom	621	874
IPR029346	USP_C	889	1098
IPR002083	MATH/TRAF_dom	58	178
IPR001394	Peptidase_C19_UCH	196	517

External Links

No external refs found!

Nbi_g28804 (UBP12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation