Nbi_g28747


Description : cohesin cofactor *(PDS5) & original description: none


Gene families : OG0000616 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000616_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g28747

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00213120 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
AMTR_s00065p00174980 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder output from all 47 species
AT1G15940 No alias Tudor/PWWP/MBT superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G31880 No alias LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant... 0.03 OrthoFinder output from all 47 species
AT5G47690 No alias binding 0.05 OrthoFinder output from all 47 species
Adi_g019469 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g022401 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g117140 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aev_g06778 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g18795 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g32765 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11522 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g20243 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g03900 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g62298 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Aob_g07435 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08128 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene50189.t1 Aspi01Gene50189 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g04527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.11G037000.1 Ceric.11G037000 cohesin cofactor *(PDS5) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.34G009800.1 Ceric.34G009800 cohesin cofactor *(PDS5) & original description:... 0.07 OrthoFinder output from all 47 species
Dcu_g14818 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02974 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01002731001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
GSVIVT01002824001 No alias No description available 0.09 OrthoFinder output from all 47 species
GSVIVT01008876001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.04 OrthoFinder output from all 47 species
GSVIVT01023587001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.03 OrthoFinder output from all 47 species
GSVIVT01035890001 No alias Cell cycle.mitosis and meiosis.sister chromatid... 0.02 OrthoFinder output from all 47 species
Gb_02487 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Gb_09525 No alias cohesin cofactor (PDS5) 0.07 OrthoFinder output from all 47 species
LOC_Os04g25960.1 LOC_Os04g25960 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os04g42320.1 LOC_Os04g42320 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
LOC_Os06g17840.1 LOC_Os06g17840 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Len_g21353 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g21968 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g46602 No alias cohesin cofactor *(PDS5) & original description: none 0.07 OrthoFinder output from all 47 species
Lfl_g09667 No alias cohesin cofactor *(PDS5) & original description: none 0.1 OrthoFinder output from all 47 species
MA_10433886g0010 No alias cohesin cofactor (PDS5) 0.07 OrthoFinder output from all 47 species
MA_10434588g0010 No alias cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Mp3g13850.1 No alias cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Msp_g25546 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g25803 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g26190 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g04827 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g44286 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g14289 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g57308 No alias cohesin cofactor *(PDS5) & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g59813 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020186 No alias exoribonuclease *(SOV) & original description: CDS=109-2307 0.04 OrthoFinder output from all 47 species
Sam_g14013 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18018 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g18046 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g24524 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35729 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g36827 No alias cohesin cofactor *(PDS5) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g065710.3.1 Solyc06g065710 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Solyc11g012770.2.1 Solyc11g012770 cohesin cofactor (PDS5) 0.04 OrthoFinder output from all 47 species
Spa_g09270 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09451 No alias cohesin cofactor *(PDS5) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g18111 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g11324 No alias cohesin cofactor *(PDS5) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g20983 No alias cohesin cofactor *(PDS5) & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e015094_P002 Zm00001e015094 cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species
Zm00001e019139_P001 Zm00001e019139 cohesin cofactor (PDS5) 0.03 OrthoFinder output from all 47 species
Zm00001e022962_P003 Zm00001e022962 cohesin cofactor (PDS5) 0.02 OrthoFinder output from all 47 species
Zm00001e030989_P001 Zm00001e030989 cohesin cofactor (PDS5) 0.08 OrthoFinder output from all 47 species
Zm00001e036853_P003 Zm00001e036853 cohesin cofactor (PDS5) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA

No InterPro domains available for this sequence

No external refs found!