AT1G22780 (RPS18A, PFL, PFL1)


Aliases : RPS18A, PFL, PFL1

Description : Ribosomal protein S13/S18 family


Gene families : OG_01_0001796 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001796_tree ,
OG_02_0001726 (LandPlants) Phylogenetic Tree(s): OG_02_0001726_tree ,
OG_03_0002411 (SeedPlants) Phylogenetic Tree(s): OG_03_0002411_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G22780
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00178430 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
AMTR_s00142p00099380 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 Archaeplastida
Cre06.g272950 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.27 Archaeplastida
GSVIVT01017975001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 Archaeplastida
GSVIVT01034582001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Gb_21599 No alias component RPS18 of SSU proteome 0.03 Archaeplastida
LOC_Os03g58050.1 No alias component RPS18 of SSU proteome 0.22 Archaeplastida
LOC_Os07g07709.1 No alias component RPS18 of SSU proteome 0.04 Archaeplastida
MA_10429265g0010 No alias component RPS18 of SSU proteome 0.14 Archaeplastida
MA_10431843g0010 No alias component RPS18 of SSU proteome 0.12 Archaeplastida
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.25 Archaeplastida
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.23 Archaeplastida
Pp3c16_2090V3.1 No alias Ribosomal protein S13/S18 family 0.21 Archaeplastida
Pp3c25_1240V3.1 No alias Ribosomal protein S13/S18 family 0.17 Archaeplastida
Pp3c25_1430V3.1 No alias Ribosomal protein S13/S18 family 0.22 Archaeplastida
Pp3c5_2800V3.1 No alias Ribosomal protein S13/S18 family 0.07 Archaeplastida
Pp3c6_21770V3.1 No alias Ribosomal protein S13/S18 family 0.18 Archaeplastida
Pp3c6_21830V3.1 No alias Ribosomal protein S13/S18 family 0.03 Archaeplastida
Smo267619 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 Archaeplastida
Solyc03g078290.3.1 No alias component RPS18 of SSU proteome 0.19 Archaeplastida
Solyc06g073370.4.1 No alias component RPS18 of SSU proteome 0.15 Archaeplastida
Solyc11g005680.2.1 No alias component RPS18 of SSU proteome 0.09 Archaeplastida
Zm00001e005967_P001 No alias component RPS18 of SSU proteome 0.24 Archaeplastida
Zm00001e011880_P001 No alias component RPS18 of SSU proteome 0.24 Archaeplastida
AMTR_s00078p00178430 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 LandPlants
AMTR_s00142p00099380 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 LandPlants
GSVIVT01017975001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.19 LandPlants
GSVIVT01034582001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.09 LandPlants
LOC_Os03g58050.1 No alias component RPS18 of SSU proteome 0.2 LandPlants
LOC_Os07g07709.1 No alias component RPS18 of SSU proteome 0.04 LandPlants
MA_10429265g0010 No alias component RPS18 of SSU proteome 0.13 LandPlants
MA_10431843g0010 No alias component RPS18 of SSU proteome 0.1 LandPlants
Mp1g07420.1 No alias component RPS18 of SSU proteome 0.24 LandPlants
Mp5g02820.1 No alias component RPS18 of SSU proteome 0.23 LandPlants
Pp3c16_2090V3.1 No alias Ribosomal protein S13/S18 family 0.2 LandPlants
Pp3c25_1240V3.1 No alias Ribosomal protein S13/S18 family 0.16 LandPlants
Pp3c25_1430V3.1 No alias Ribosomal protein S13/S18 family 0.21 LandPlants
Pp3c5_2800V3.1 No alias Ribosomal protein S13/S18 family 0.06 LandPlants
Pp3c6_21770V3.1 No alias Ribosomal protein S13/S18 family 0.16 LandPlants
Pp3c6_21830V3.1 No alias Ribosomal protein S13/S18 family 0.03 LandPlants
Smo267619 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 LandPlants
Solyc03g078290.3.1 No alias component RPS18 of SSU proteome 0.18 LandPlants
Solyc06g073370.4.1 No alias component RPS18 of SSU proteome 0.15 LandPlants
Solyc11g005680.2.1 No alias component RPS18 of SSU proteome 0.09 LandPlants
Zm00001e005967_P001 No alias component RPS18 of SSU proteome 0.2 LandPlants
Zm00001e011880_P001 No alias component RPS18 of SSU proteome 0.19 LandPlants
AMTR_s00078p00178430 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.12 SeedPlants
AMTR_s00142p00099380 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 SeedPlants
GSVIVT01017975001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 SeedPlants
LOC_Os03g58050.1 No alias component RPS18 of SSU proteome 0.2 SeedPlants
LOC_Os07g07709.1 No alias component RPS18 of SSU proteome 0.04 SeedPlants
MA_10429265g0010 No alias component RPS18 of SSU proteome 0.13 SeedPlants
MA_10431843g0010 No alias component RPS18 of SSU proteome 0.1 SeedPlants
Solyc03g078290.3.1 No alias component RPS18 of SSU proteome 0.16 SeedPlants
Solyc11g005680.2.1 No alias component RPS18 of SSU proteome 0.09 SeedPlants
Zm00001e005967_P001 No alias component RPS18 of SSU proteome 0.2 SeedPlants
Zm00001e011880_P001 No alias component RPS18 of SSU proteome 0.19 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005618 cell wall IDA Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
CC GO:0005774 vacuolar membrane IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006412 translation ISS Interproscan
BP GO:0006413 translational initiation TAS Interproscan
CC GO:0009506 plasmodesma IDA Interproscan
CC GO:0015935 small ribosomal subunit ISS Interproscan
CC GO:0022627 cytosolic small ribosomal subunit IDA Interproscan
BP GO:0042254 ribosome biogenesis IBA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001892 Ribosomal_S13 14 142
No external refs found!