AT4G31700 (RPS6A, RPS6)


Aliases : RPS6A, RPS6

Description : ribosomal protein S6


Gene families : OG_01_0002789 (Gene family) Phylogenetic Tree(s): OG0002789_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G31700
Cluster HCCA cluster: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000704.73 No alias 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.32 Gene family
Cre09.g400650 No alias 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.17 Gene family
GSVIVT01009072001 No alias 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.15 Gene family
GSVIVT01015776001 No alias 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.08 Gene family
LOC_Os03g27260 Os03g0390000 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.3 Gene family
LOC_Os07g42950 Os07g0622100 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.29 Gene family
MA_10426804g0010 No alias 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.12 Gene family
MA_72828g0010 No alias 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.09 Gene family
Smo172795 PACid_15414360 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.22 Gene family
Solyc08g006040.3.1 Solyc08g006040.3 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.26 Gene family
Solyc08g074240.3.1 Solyc08g074240.3 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.37 Gene family
Solyc12g096300.2.1 Solyc12g096300.2 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.26 Gene family
Zm00001d006899 GRMZM5G851698 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.33 Gene family
Zm00001d022180 GRMZM2G054136 29.2.1.2.1.6 protein.synthesis.ribosomal... 0.01 Gene family

Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation RCA Arabidopsis.org
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005634 nucleus ISM Arabidopsis.org
CC GO:0005730 nucleolus IDA Arabidopsis.org
CC GO:0005739 mitochondrion ISM Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
BP GO:0006364 rRNA processing IBA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
CC GO:0009507 chloroplast IDA Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022626 cytosolic ribosome IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit IDA Arabidopsis.org
CC GO:0022627 cytosolic small ribosomal subunit ISS Arabidopsis.org
BP GO:0040007 growth IGI Arabidopsis.org
BP GO:0042274 ribosomal small subunit biogenesis IBA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001377 Ribosomal_S6e 1 128
No external refs found!