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  5. Nbi_g27629

Nbi_g27629


Description : component *(MED26) of MEDIATOR transcription co-activator complex & original description: none


Gene families : OG0000390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27629

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00101p00137160 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
AT5G05140 No alias Transcription elongation factor (TFIIS) family protein 0.03 OrthoFinder output from all 47 species
Adi_g010431 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g107705 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g32630 No alias component *(MED26) of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Ala_g21085 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species
Als_g29178 No alias component *(MED26) of MEDIATOR transcription... 0.05 OrthoFinder output from all 47 species
Aob_g07318 No alias component *(MED26) of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Aob_g40278 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g26262 No alias component *(MED26) of MEDIATOR transcription... 0.11 OrthoFinder output from all 47 species
Aspi01Gene07207.t1 Aspi01Gene07207 component *(MED26) of MEDIATOR transcription... 0.06 OrthoFinder output from all 47 species
Aspi01Gene69253.t1 Aspi01Gene69253 component *(MED26) of MEDIATOR transcription... 0.06 OrthoFinder output from all 47 species
Azfi_s0037.g025894 No alias not classified & original description: CDS=217-1497 0.03 OrthoFinder output from all 47 species
Azfi_s0073.g037267 No alias not classified & original description: CDS=379-1959 0.03 OrthoFinder output from all 47 species
Ceric.15G055300.1 Ceric.15G055300 component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Ceric.30G069800.1 Ceric.30G069800 not classified & original description: pacid=50608596... 0.04 OrthoFinder output from all 47 species
Dcu_g48948 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
LOC_Os05g34210.1 LOC_Os05g34210 component MED26 of MEDIATOR transcription co-activator complex 0.02 OrthoFinder output from all 47 species
Solyc10g080930.2.1 Solyc10g080930 component MED26 of MEDIATOR transcription co-activator complex 0.04 OrthoFinder output from all 47 species
Spa_g04232 No alias component *(MED26) of MEDIATOR transcription... 0.03 OrthoFinder output from all 47 species
Tin_g09980 No alias component *(MED26) of MEDIATOR transcription... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005576 extracellular region IEP HCCA
CC GO:0005618 cell wall IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP HCCA
CC GO:0030312 external encapsulating structure IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
InterPro domains Description Start Stop
IPR017923 TFIIS_N 154 199
No external refs found!