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  5. Nbi_g27450

Nbi_g27450


Description : EC_6.1 ligase forming carbon-oxygen bond & original description: none


Gene families : OG0004749 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004749_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27450
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00146p00075190 evm_27.TU.AmTr_v1... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 OrthoFinder output from all 47 species
Adi_g108261 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Aop_g00672 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.06 OrthoFinder output from all 47 species
Cba_g09523 No alias EC_6.1 ligase forming carbon-oxygen bond & original... 0.03 OrthoFinder output from all 47 species
Cre09.g389430 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 OrthoFinder output from all 47 species
Gb_38998 No alias subunit alpha of phenylalanine-tRNA ligase complex 0.02 OrthoFinder output from all 47 species
LOC_Os10g26130.1 LOC_Os10g26130 subunit alpha of phenylalanine-tRNA ligase complex 0.06 OrthoFinder output from all 47 species
MA_175234g0010 No alias Phenylalanine--tRNA ligase alpha subunit, cytoplasmic... 0.02 OrthoFinder output from all 47 species
Mp8g03550.1 No alias subunit alpha of phenylalanine-tRNA ligase complex 0.02 OrthoFinder output from all 47 species
Zm00001e015929_P001 Zm00001e015929 subunit alpha of phenylalanine-tRNA ligase complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0043039 tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
InterPro domains Description Start Stop
IPR002319 Phenylalanyl-tRNA_Synthase 227 503
IPR040724 PheRS_DBD1 24 80
IPR040725 PheRS_DBD3 94 152
No external refs found!