AT4G24560 (UBP16)


Aliases : UBP16

Description : ubiquitin-specific protease 16


Gene families : OG_01_0000134 (Gene family) Phylogenetic Tree(s): OG0000134_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G24560
Cluster HCCA cluster: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000403.102 No alias 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.01 Gene family
GSVIVT01000696001 No alias 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.05 Gene family
GSVIVT01009158001 No alias 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.02 Gene family
GSVIVT01033166001 No alias 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.07 Gene family
LOC_Os06g44380 Os06g0654000 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.03 Gene family
Smo2719 PACid_15412212 No description available 0.03 Gene family
Smo420048 PACid_15409825 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.02 Gene family
Solyc04g076210.2.1 Solyc04g076210.2 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.07 Gene family
Solyc07g061780.3.1 Solyc07g061780.3 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.04 Gene family
Solyc08g069050.3.1 Solyc08g069050.3 29.5.11 protein.degradation.ubiquitin ubiquitin-specific... 0.03 Gene family
Zm00001d016165 GRMZM2G126447 29.5.11.5 protein.degradation.ubiquitin.ubiquitin... 0.04 Gene family
Zm00001d050488 No alias 29.5.11 protein.degradation.ubiquitin Encodes a... 0.06 Gene family

Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process RCA Arabidopsis.org
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005576 extracellular region ISM Arabidopsis.org
BP GO:0006486 protein glycosylation RCA Arabidopsis.org
BP GO:0006487 protein N-linked glycosylation RCA Arabidopsis.org
BP GO:0008283 cell proliferation IGI Arabidopsis.org
BP GO:0009651 response to salt stress IEP Arabidopsis.org
BP GO:0009908 flower development IGI Arabidopsis.org
BP GO:0016579 protein deubiquitination IDA Arabidopsis.org
BP GO:0048364 root development IGI Arabidopsis.org
BP GO:0048366 leaf development IGI Arabidopsis.org
BP GO:0048367 shoot system development IGI Arabidopsis.org
BP GO:1901000 regulation of response to salt stress IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 542 844
IPR002893 Znf_MYND 74 111
No external refs found!