1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g27262

Nbi_g27262 (PGP13)


Aliases : PGP13

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000928 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0000928_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27262
Cluster HCCA: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
Aop_g19105 ABCB19,... not classified & original description: none 0.01 OrthoFinder output from all 39 species
Aop_g68609 PGP13 subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 39 species
Ceric.10G031400.1 PGP13, Ceric.10G031400 subfamily ABCB transporter & original description:... 0.01 OrthoFinder output from all 39 species
Dde_g46023 PGP13 subfamily ABCB transporter & original description: none 0.09 OrthoFinder output from all 39 species
Len_g12070 PGP13 subfamily ABCB transporter & original description: none 0.01 OrthoFinder output from all 39 species
Ppi_g07008 ABCB14, ATABCB14, PGP14 subfamily ABCB transporter & original description: none 0.06 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 435 584
IPR003439 ABC_transporter-like_ATP-bd 1082 1230
IPR011527 ABC1_TM_dom 741 1013
IPR011527 ABC1_TM_dom 93 365
No external refs found!