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  5. Nbi_g27246

Nbi_g27246


Description : not classified & original description: none


Gene families : OG0007319 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007319_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g27246
Cluster HCCA: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
Gb_05258 No alias Phytochrome-interacting ankyrin-repeat protein 1... 0.02 OrthoFinder output from all 47 species
Lfl_g01571 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0137.g022503 No alias not classified & original description: CDS=518-1084 0.03 OrthoFinder output from all 47 species
Solyc08g005910.3.1 Solyc08g005910 Phytochrome-interacting ankyrin-repeat protein 2... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 233 274
IPR002110 Ankyrin_rpt 156 226
No external refs found!