AT4G20830


Description : FAD-binding Berberine family protein


Gene families : OG_01_0000072 (Gene family) Phylogenetic Tree(s): OG0000072_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G20830
Cluster HCCA cluster: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
AT1G26380 No alias FAD-binding Berberine family protein 0.07 Gene family
AT1G30700 No alias FAD-binding Berberine family protein 0.06 Gene family
AT1G30720 No alias FAD-binding Berberine family protein 0.04 Gene family
AT4G20820 No alias FAD-binding Berberine family protein 0.01 Gene family
AT5G44380 No alias FAD-binding Berberine family protein 0.05 Gene family
GSVIVT01003283001 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
GSVIVT01020745001 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
GSVIVT01020746001 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.06 Gene family
GSVIVT01021720001 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
GSVIVT01021723001 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
GSVIVT01021734001 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.06 Gene family
GSVIVT01021745001 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
LOC_Os06g35630 Os06g0549300 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
LOC_Os06g35650 Os06g0549600 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.04 Gene family
LOC_Os06g35700 Os06g0549900 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.05 Gene family
MA_10428737g0020 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
MA_132990g0010 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
MA_162773g0010 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
MA_613919g0010 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
MA_8516716g0010 No alias 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
Solyc02g069690.1.1 Solyc02g069690.1 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
Solyc02g070060.2.1 Solyc02g070060.2 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
Solyc02g070170.1.1 Solyc02g070170.1 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
Solyc02g079440.2.1 Solyc02g079440.2 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
Solyc02g079460.2.1 Solyc02g079460.2 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.02 Gene family
Zm00001d037005 GRMZM2G403076 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family
Zm00001d046318 GRMZM2G080839 26.8 misc.nitrilases, *nitrile lyases, berberine bridge... 0.03 Gene family

Type GO Term Name Evidence Source
BP GO:0002679 respiratory burst involved in defense response RCA Arabidopsis.org
CC GO:0005739 mitochondrion IDA Arabidopsis.org
CC GO:0005773 vacuole IDA Arabidopsis.org
CC GO:0005829 cytosol IDA Arabidopsis.org
CC GO:0005886 plasma membrane IDA Arabidopsis.org
BP GO:0006612 protein targeting to membrane RCA Arabidopsis.org
BP GO:0006979 response to oxidative stress IEP Arabidopsis.org
BP GO:0006979 response to oxidative stress RCA Arabidopsis.org
MF GO:0009055 electron transfer activity ISS Arabidopsis.org
CC GO:0009505 plant-type cell wall IDA Arabidopsis.org
CC GO:0009506 plasmodesma IDA Arabidopsis.org
CC GO:0009507 chloroplast ISM Arabidopsis.org
BP GO:0009611 response to wounding RCA Arabidopsis.org
BP GO:0010200 response to chitin RCA Arabidopsis.org
BP GO:0010363 regulation of plant-type hypersensitive response RCA Arabidopsis.org
BP GO:0030968 endoplasmic reticulum unfolded protein response RCA Arabidopsis.org
BP GO:0043069 negative regulation of programmed cell death RCA Arabidopsis.org
CC GO:0048046 apoplast IDA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR012951 BBE 477 534
IPR006094 Oxid_FAD_bind_N 87 223
No external refs found!