AT4G18750 (DOT4)


Aliases : DOT4

Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G18750
Cluster HCCA cluster: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000086001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01000244001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01007645001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01008173001 No alias No description available 0.06 Gene family
GSVIVT01009407001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01011333001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01015466001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01017365001 No alias No description available 0.08 Gene family
GSVIVT01018597001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01020758001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
GSVIVT01021246001 No alias No description available 0.04 Gene family
GSVIVT01021756001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
GSVIVT01023860001 No alias No description available 0.05 Gene family
GSVIVT01023971001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01024912001 No alias No description available 0.04 Gene family
GSVIVT01025569001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
GSVIVT01029382001 No alias 35.1.27 not assigned.no ontology.tetratricopeptide... 0.05 Gene family
GSVIVT01032394001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
GSVIVT01032994001 No alias No description available 0.04 Gene family
GSVIVT01033304001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01033389001 No alias No description available 0.03 Gene family
GSVIVT01036511001 No alias No description available 0.07 Gene family
GSVIVT01036943001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
GSVIVT01037562001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os01g41650 Os01g0600400 No description available 0.03 Gene family
LOC_Os03g04390 Os03g0136700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os04g39410 Os04g0469400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.03 Gene family
LOC_Os06g02200 Os06g0112000 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os12g30620 Os12g0490100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_100287g0010 No alias No description available 0.02 Gene family
MA_10157572g0010 No alias No description available 0.03 Gene family
MA_11454g0010 No alias No description available 0.03 Gene family
MA_116829g0010 No alias No description available 0.03 Gene family
MA_123466g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_193080g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_20622g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_322292g0010 No alias No description available 0.02 Gene family
MA_38266g0010 No alias No description available 0.05 Gene family
MA_43615g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_442926g0010 No alias No description available 0.03 Gene family
MA_4438g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_56322g0010 No alias No description available 0.03 Gene family
MA_86628g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
MA_86739g0010 No alias No description available 0.03 Gene family
MA_94165g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Smo106861 PACid_15420913 No description available 0.03 Gene family
Smo136134 PACid_15414856 No description available 0.02 Gene family
Smo47998 PACid_15423210 No description available 0.02 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.03 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.04 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.05 Gene family
Solyc11g066920.1.1 Solyc11g066920.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc12g006575.1.1 Solyc12g006575.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d020825 GRMZM5G851929 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Zm00001d025695 GRMZM2G481373 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.08 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.08 Gene family
Zm00001d032185 GRMZM2G161368 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.1 Gene family

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast ISM Arabidopsis.org
BP GO:0010087 phloem or xylem histogenesis IMP Arabidopsis.org
BP GO:0010305 leaf vascular tissue pattern formation IMP Arabidopsis.org
BP GO:0010588 cotyledon vascular tissue pattern formation IMP Arabidopsis.org
BP GO:0048366 leaf development IMP Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 334 360
IPR032867 DYW_dom 737 861
IPR002885 Pentatricopeptide_repeat 563 611
IPR002885 Pentatricopeptide_repeat 163 205
IPR002885 Pentatricopeptide_repeat 461 510
IPR002885 Pentatricopeptide_repeat 260 307
IPR002885 Pentatricopeptide_repeat 361 409
No external refs found!