AT4G18730 (RPL16B)


Aliases : RPL16B

Description : ribosomal protein L16B


Gene families : OG_01_0001235 (Gene family) Phylogenetic Tree(s): OG0001235_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G18730
Cluster HCCA cluster: Cluster_211

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020610.38 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.25 Gene family
Cre01.g027000 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.56 Gene family
GSVIVT01020743001 No alias 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.3 Gene family
GSVIVT01021244001 No alias 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.36 Gene family
LOC_Os01g10820 Os01g0205500 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.36 Gene family
LOC_Os02g14059 Os02g0235600 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.02 Gene family
LOC_Os05g11710 Os05g0207300 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.37 Gene family
LOC_Os06g35730 Os06g0550000 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.27 Gene family
MA_74060g0010 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.08 Gene family
MA_86694g0010 No alias 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.14 Gene family
Smo444767 PACid_15419040 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.27 Gene family
Solyc02g086240.3.1 Solyc02g086240.3 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.41 Gene family
Solyc10g007970.2.1 Solyc10g007970.2 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.39 Gene family
Solyc12g010930.2.1 Solyc12g010930.2 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.45 Gene family
Zm00001d010016 GRMZM5G813584 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.28 Gene family
Zm00001d016200 GRMZM2G014444 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.42 Gene family
Zm00001d046317 GRMZM2G001816 29.2.1.2.2.16 protein.synthesis.ribosomal... 0.43 Gene family
Zm00001d053547 GRMZM2G018770 29.2.1.2.2.11 protein.synthesis.ribosomal... 0.43 Gene family

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Arabidopsis.org
CC GO:0005737 cytoplasm ISM Arabidopsis.org
CC GO:0005773 vacuole IDA Arabidopsis.org
BP GO:0006412 translation ISS Arabidopsis.org
BP GO:0006412 translation TAS Arabidopsis.org
BP GO:0010102 lateral root morphogenesis IEP Arabidopsis.org
CC GO:0016020 membrane IDA Arabidopsis.org
CC GO:0022625 cytosolic large ribosomal subunit IDA Arabidopsis.org
CC GO:0022625 cytosolic large ribosomal subunit ISS Arabidopsis.org
CC GO:0022625 cytosolic large ribosomal subunit TAS Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 66 164
IPR031310 Ribosomal_L5_N 9 62
No external refs found!