AT4G16250 (PHYD)


Aliases : PHYD

Description : phytochrome D


Gene families : OG_01_0000639 (Gene family) Phylogenetic Tree(s): OG0000639_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): AT4G16250
Cluster HCCA cluster: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
Zm00001d028905 GRMZM2G124532 30.11 signalling.light Red/far-red photoreceptor... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity ISS Arabidopsis.org
MF GO:0005515 protein binding IPI Arabidopsis.org
CC GO:0005634 nucleus IDA Arabidopsis.org
BP GO:0006355 regulation of transcription, DNA-templated ISS Arabidopsis.org
BP GO:0007623 circadian rhythm RCA Arabidopsis.org
MF GO:0008020 G-protein coupled photoreceptor activity ISS Arabidopsis.org
BP GO:0009630 gravitropism RCA Arabidopsis.org
MF GO:0009883 red or far-red light photoreceptor activity IGI Arabidopsis.org
BP GO:0010017 red or far-red light signaling pathway IGI Arabidopsis.org
BP GO:0010017 red or far-red light signaling pathway RCA Arabidopsis.org
BP GO:0010155 regulation of proton transport RCA Arabidopsis.org
MF GO:0042802 identical protein binding IPI Arabidopsis.org
BP GO:0046777 protein autophosphorylation RCA Arabidopsis.org
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013654 PAS_2 105 222
IPR013515 Phytochrome_cen-reg 450 625
IPR013767 PAS_fold 790 909
IPR013767 PAS_fold 659 774
IPR003661 HisK_dim/P 931 995
IPR003018 GAF 255 437
IPR003594 HATPase_C 1043 1143
No external refs found!