AT4G15975

Description : RING/U-box superfamily protein

Gene families : OG_01_0000002 (Gene family) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR network (cutoff 100): AT4G15975
Cluster	HCCA cluster: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AT1G49230	No alias	RING/U-box superfamily protein	0.04	Gene family
AT2G17450	RHA3A	RING-H2 finger A3A	0.03	Gene family
AT2G27940	No alias	RING/U-box superfamily protein	0.04	Gene family
AT2G35000	No alias	RING/U-box superfamily protein	0.04	Gene family
AT2G42360	No alias	RING/U-box superfamily protein	0.03	Gene family
AT5G10380	ATRING1, RING1	RING/U-box superfamily protein	0.03	Gene family
AT5G66070	No alias	RING/U-box superfamily protein	0.03	Gene family
Cpa\|evm.model.tig00020629.137	No alias	No description available	0.01	Gene family
Cpa\|evm.model.tig00020934.54	No alias	No description available	0.01	Gene family
GSVIVT01009098001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
GSVIVT01015682001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
GSVIVT01020665001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.07	Gene family
GSVIVT01032684001	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
LOC_Os01g20910	Os01g0311100	No description available	0.02	Gene family
LOC_Os01g60730	Os01g0822800	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os02g36330	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
LOC_Os02g46340	Os02g0688800	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
LOC_Os03g44636	Os03g0648600	No description available	0.04	Gene family
LOC_Os04g37740	Os04g0450400	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os04g49550	Os04g0585000	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
LOC_Os06g09310	Os06g0192800	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
LOC_Os06g11450	Os06g0218300	No description available	0.03	Gene family
LOC_Os06g34400	Os06g0534900,...	No description available	0.02	Gene family
LOC_Os06g34560	Os06g0536466,...	No description available	0.02	Gene family
LOC_Os06g34870	Os06g0539900,...	No description available	0.01	Gene family
LOC_Os06g34880	Os06g0540200	No description available	0.01	Gene family
LOC_Os08g43670	Os08g0550400	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
LOC_Os10g41660	Os10g0566400	No description available	0.01	Gene family
MA_10021g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_10436028g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_10436208g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
MA_12363g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_144298g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_152783g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_17390g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_181940g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_184439g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_214717g0010	No alias	No description available	0.03	Gene family
MA_25345g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
MA_42543g0010	No alias	No description available	0.02	Gene family
MA_465316g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_61349g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_6934973g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
MA_77628g0010	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
MA_80729g0030	No alias	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Smo172324	PACid_15411137	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Smo96681	PACid_15409405	No description available	0.01	Gene family
Solyc00g007220.3.1	Solyc00g007220.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8	0.04	Gene family
Solyc01g081040.3.1	Solyc01g081040.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc01g100095.1.1	Solyc01g100095.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
Solyc03g112340.1.1	Solyc03g112340.1	No description available	0.02	Gene family
Solyc03g123680.1.1	Solyc03g123680.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Solyc04g009780.1.1	Solyc04g009780.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Solyc07g053420.3.1	Solyc07g053420.3	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
Solyc09g075320.1.1	Solyc09g075320.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Solyc10g008080.2.1	Solyc10g008080.2	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Solyc10g011880.1.1	Solyc10g011880.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Solyc10g081780.2.1	Solyc10g081780.2	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Solyc10g081790.1.1	Solyc10g081790.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Solyc12g055710.1.1	Solyc12g055710.1	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d003497	GRMZM2G171277	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Zm00001d005936	GRMZM2G015753	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Zm00001d008914	GRMZM2G014571	No description available	0.01	Gene family
Zm00001d014949	GRMZM2G053707	No description available	0.02	Gene family
Zm00001d016139	GRMZM2G098925	No description available	0.03	Gene family
Zm00001d016140	GRMZM2G358711	No description available	0.03	Gene family
Zm00001d016682	GRMZM5G860214	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d016840	GRMZM2G460958	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d017678	GRMZM2G004480	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d017923	No alias	No description available	0.03	Gene family
Zm00001d018122	GRMZM2G323013	No description available	0.02	Gene family
Zm00001d020789	GRMZM2G082653	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.05	Gene family
Zm00001d021316	GRMZM2G449875	No description available	0.01	Gene family
Zm00001d023341	GRMZM2G467576	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Zm00001d026021	GRMZM2G031280	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL8	0.01	Gene family
Zm00001d027685	GRMZM2G056804	No description available	0.05	Gene family
Zm00001d027983	GRMZM2G148706	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING E3...	0.03	Gene family
Zm00001d029806	GRMZM2G052344	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.01	Gene family
Zm00001d031100	No alias	No description available	0.03	Gene family
Zm00001d037019	GRMZM2G026562	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING ATL43	0.02	Gene family
Zm00001d037300	GRMZM2G324375	No description available	0.02	Gene family
Zm00001d038420	GRMZM2G075782	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d040638	No alias	No description available	0.01	Gene family
Zm00001d045051	GRMZM2G478553	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.03	Gene family
Zm00001d046147	No alias	No description available	0.03	Gene family
Zm00001d050514	GRMZM2G068239	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d050798	GRMZM2G044773	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.04	Gene family
Zm00001d052268	GRMZM2G080079	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family
Zm00001d053236	GRMZM2G132531	29.5.11.4.2 protein.degradation.ubiquitin.E3.RING...	0.02	Gene family

Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002679	respiratory burst involved in defense response	RCA	Arabidopsis.org
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Arabidopsis.org
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Arabidopsis.org
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Arabidopsis.org
BP	GO:0010200	response to chitin	RCA	Arabidopsis.org
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0035556	intracellular signal transduction	RCA	Arabidopsis.org
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0045730	respiratory burst	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	75	118

External Links

No external refs found!

AT4G15975

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation